Query= MSMg01no369_n19.b1 MSMg01no369_n19.b1 CHROMAT_FILE:
MSMg01no369_n19.b1 PHD_FILE: MSMg01no369_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:42 2005
(509 letters)
>mm_chr2_79336726_79337634
Length = 909
Score = 739 bits (382), Expect = 0.0
Identities = 394/398 (98%)
Strand = Plus / Minus
Query: 112 cctgcccaaaggcctttgccttgctaagtctcattagaaagcacctcctccagccttctg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 cctgcccaaaggcctttgccttgctaagtctcattagaaagcacctcctccagccttctg 850
Query: 172 cgtgatcccaccctcacctgcttcaaattctctatctgattatcattttctcagtagact 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 cgtgatcccaccctcacctgcttcaaattctctatctgattatcattttctcagtagact 790
Query: 232 tttctttctgaccatctcatctagatgtctctgtcaattcctatcacactccctgcttat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tttctttctgaccatctcatctagatgtctctgtcaattcctatcacactccctgcttat 730
Query: 292 attttcctccttagttcttaggatatataatattatcttgtttactattattgatcccgg 351
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 729 attttcctccttagttcttaggatatataatattattttttttactattattgatcccgg 670
Query: 352 atgttgttcagcaaaaacagggcaaaatccctcttcattgcaacactgctgtctctacag 411
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 669 atgttgttcagcaaaaacagggcaaaatccttcttcattgcaacactgctgtctctacag 610
Query: 412 tagcacagagaagttctgtggaactcttattctacccccagcctgctgacatcatagact 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tagcacagagaagttctgtggaactcttattctacccccagcctgctgacatcatagact 550
Query: 472 tcttctattgtttattttatatttttgcaggaatatca 509
||||||||||||||||||||||||||||| ||||||||
Sbjct: 549 tcttctattgtttattttatatttttgcaagaatatca 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_n19.g1 MSMg01no369_n19.g1 CHROMAT_FILE:
MSMg01no369_n19.g1 PHD_FILE: MSMg01no369_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:42 2005
(509 letters)
>mm_chr2_79123559_79124463
Length = 905
Score = 899 bits (465), Expect = 0.0
Identities = 497/509 (97%), Gaps = 4/509 (0%)
Strand = Plus / Plus
Query: 1 ttctaagtcggcattgtcttgagggtatacatcacatgtcttcacaaaaaccccgcctct 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ttctaagtcggcattgtcttgagggtatacatcacatgtcttcacagaaaccccgcctct 260
Query: 61 cttccctttagtcatttcctaaggagccagcccattgtatccttcagtccttggatttaa 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 cttccctttagtcatttcctaaggcgccagcccattgtatccttcagtccttggatttaa 320
Query: 121 tcccattccatgtcaatggtagtgattacatctgtagagatagattcaaattttaaattc 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccattccatgtcaatgatagtgattacatctgtagagatagattcaaattttaaattc 380
Query: 181 atttagaacaaaaatgagccttagtgaaattctggaatgggaaatgctatcaaaaaaagc 240
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 381 atttagaacaaaaatgagccttagtgaaaatctggaatgggaaatactatcaaaaaaagc 440
Query: 241 tgagaataatcccagttgtgactcagagctcattatcacagcatacttggacagctcatc 300
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 441 tgagaataatcccagttgtgactcagagctcattctcacagcatacttggacagttcatc 500
Query: 301 ctatatacaataacagctcaccttcagcttcaaagatgatgattgaccagtgcactgctg 360
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 501 ctatatacaataacagctcaccttcagcttcaaagatgatgat--a--agtgcactgctg 556
Query: 361 cttagataaggttccaaagggcagcttaggtcacatcatttgttatctcagagacctcca 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 557 cttagataaggttccaaagggcagcttaggtcacatcatctgttatctcagagacctcca 616
Query: 421 tggcttgctatcctttgcttcagaaagagtaaatttcccttttaatccatttgctatata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tggcttgctatcctttgcttcagaaagagtaaatttcccttttaatccatttgctatata 676
Query: 481 ctgtaagacagcaatgtgtcttttgctgt 509
|||||||||||||||||||||||||||||
Sbjct: 677 ctgtaagacagcaatgtgtcttttgctgt 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 905
Length adjustment: 10
Effective length of query: 499
Effective length of database: 895
Effective search space: 446605
Effective search space used: 446605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
