Query= MSMg01no370_d04.b1 MSMg01no370_d04.b1 CHROMAT_FILE:
MSMg01no370_d04.b1 PHD_FILE: MSMg01no370_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:10 2005
(397 letters)
>mm_chr2_35280853_35281649
Length = 797
Score = 683 bits (353), Expect = 0.0
Identities = 373/381 (97%), Gaps = 4/381 (1%)
Strand = Plus / Minus
Query: 5 gaattcctgaaatctacaaaagtcacacacacacacacacacacacacacacacacacac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gaattcctgaaatctacaaaagtcacacacacacacacacacacacacacacacacacac 598
Query: 65 acacacacacacacacctaccaggctgctgagggtggggatcaggagtaccagcctggac 124
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 acacacacac---c-cctaccaggctgctgagggtggggatcaggagtaccagcctggac 542
Query: 125 tgcctctggtggcacgggtgactctgcttctctgtgtcctgctccttctactaggaagag 184
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 541 tgcctctggtggcacgggtgactctgtttctctgtgtcctgctccttctactaggaagag 482
Query: 185 gctttgaatttgatcctaggtaagtggggttggcacggctgagcctggaggcctgggctc 244
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctttggatttgatcctaggtaagtggggttggcacggctgagcctggaggcctgggctt 422
Query: 245 gcccttatctcccagcaagcccaggatgtctttagacttgatcagagaaatgaaagttca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcccttatctcccagcaagcccaggatgtctttagacttgatcagagaaatgaaagttca 362
Query: 305 tctctcttggcagcagctctagctcaggctgggctagagtaggtggcgaggacttgaatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 361 tctctcttggcagcagctctagctcaggctgggctagagtaggtggcgaggccttgaatg 302
Query: 365 tcccccgttctcatccatttg 385
|||||||||||||||||||||
Sbjct: 301 tcccccgttctcatccatttg 281
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_d04.g1 MSMg01no370_d04.g1 CHROMAT_FILE:
MSMg01no370_d04.g1 PHD_FILE: MSMg01no370_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:10 2005
(259 letters)
>mm_chr2_35213087_35213745
Length = 659
Score = 375 bits (194), Expect = e-108
Identities = 213/220 (96%), Gaps = 5/220 (2%)
Strand = Plus / Plus
Query: 44 acacacacacacacacacacacacagtgatataagtctagaaagagagaattggtttctc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acacacacacacacacacacacacagtgatataagtctagaaagagagaattggtttctc 303
Query: 104 tgtgagcttagcagagttagtcacacggtggctccagcacacaggaaacttgaacaaagg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgtgagcttagcagagttagtcacacggtggctccagcacacaggaaacttgaacaaagg 363
Query: 164 aacacagagagatcctcagctcatagatgctgggaacctctgctgtgacgagacagatgc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aacacagagagatcctcagctcatagatgctgggaacctctgctgtgacgagacagatgc 423
Query: 224 aagaagagg-agaggagagg-gag--agggagagggagag 259
||| ||||| ||||| |||| ||| ||||||| ||||||
Sbjct: 424 aaggagagggagagg-gaggagaggaagggagaaggagag 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space: 162500
Effective search space used: 162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
