Query= MSMg01no370_f03.b1 MSMg01no370_f03.b1 CHROMAT_FILE:
MSMg01no370_f03.b1 PHD_FILE: MSMg01no370_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:20 2005
(446 letters)
>mm_chr2_169577929_169578774
Length = 846
Score = 806 bits (417), Expect = 0.0
Identities = 435/441 (98%)
Strand = Plus / Minus
Query: 4 ggaattccttctcttgtccttggcattgagtagacaaaaggatccactcacggcaaggca 63
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 644 ggaattccttctcttgtccttgacattgagtagacaaaaggatccactcatggcaaggca 585
Query: 64 cattcccagcatgcttggaacacacagaaccctgggtaggggaattctaatgatctccta 123
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 584 cattcccagcatgcttggaacacaaagaaccctgggtaggggaattctaaggatctccta 525
Query: 124 aacccaggctgtatcatatcatcctttctctccaatgcaggaagtcagtttctattgaga 183
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 524 aacccaggctgtatcatatcatcctttatctccaatgcaggaagtcagtttctattgaga 465
Query: 184 cacagtgctacgaggaagtttctcactgcctgacaggttaagttttggacatgtgccata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cacagtgctacgaggaagtttctcactgcctgacaggttaagttttggacatgtgccata 405
Query: 244 acaccattaggccttgaataaaattggggataaagagggttccacttggaacattgcctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 acaccattaggccttgaataaaattggggataaagagggttccacttggaacattgcctg 345
Query: 304 aagatgtagttgttagtgcagaaagaggcccggataaggatattctaacaacaataaggg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aagatgtagttgttagtgcagaaagaggcccggataaggatattctaacaacaataaggg 285
Query: 364 caacttgcaaatgaagttcttaaagacatcattttaattaatttatctgcagaccgggtc 423
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 284 caacttgcaaatgaagttcttaaagacatcattttaattaatttatctggagaccgggtc 225
Query: 424 tcacaacgaagtcctggttag 444
|||||||||||||||||||||
Sbjct: 224 tcacaacgaagtcctggttag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_f03.g1 MSMg01no370_f03.g1 CHROMAT_FILE:
MSMg01no370_f03.g1 PHD_FILE: MSMg01no370_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:20 2005
(390 letters)
>mm_chr2_169414213_169415002
Length = 790
Score = 571 bits (295), Expect = e-167
Identities = 379/435 (87%), Gaps = 46/435 (10%)
Strand = Plus / Plus
Query: 1 acccatacagggcagctcacatctgcctgtatctccaattccaaggaatctgaccccttc 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 157 acccatacagggcagctcacgtctgcctgtatctccaattccaaggaatctgaccccttc 216
Query: 61 tcccaggcatcgtggg----cacccctcagcatgcacacacatgtacaaatacacacgta 116
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ccccaggcatcgtgggcacccacccctcagcatgcacacacatgtacaaatacacacgta 276
Query: 117 cgtaagagaaagagtggcgagagaaagggagcgaggaagaagggaaggtaatgagcagga 176
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 277 cgtaagagaaagagtggcgagagaaagggagcgaggaagaagggaaggtcatgagcagga 336
Query: 177 aggaaggaag----------------------------------------aggagaaaga 196
|||||||||| ||||||||||
Sbjct: 337 aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaaaggagaaaga 396
Query: 197 ggaaacaactgaggggcaaaggttagtaagaattggggttgaatcttgagccccaaattg 256
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 397 ggaaacaactgaggggcaaaggttagtaagaattggggttaaatcttgagccccaaattg 456
Query: 257 ttagcatggcccctttgcagtgggcagagctcctgatggagcagaccaggctctctgagt 316
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttagcatggcctttttgcagtgggcagagctcctgatggagcagaccaggctctctgagt 516
Query: 317 gcatcacgtcctctgagttcactctgccatgatcagtcgg-gtgattcatgccaagagat 375
||| |||||||||||||||||||||||| ||||||||||| | ||||| ||||||||||
Sbjct: 517 gcaccacgtcctctgagttcactctgccctgatcagtcggag-gattcccgccaagagat 575
Query: 376 ttttcttttctttca 390
|||||||||||||||
Sbjct: 576 ttttcttttctttca 590
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space: 297561
Effective search space used: 297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
