BAC Information

Click to search

BAC

Clone NameMSMg01-371C10
Chromosome2 (Build37)
Map Location 16,274,893 - 16,275,350
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667329, LOC227588, LOC625457
Downstream genePlxdc2, 4930515L03Rik, LOC383665, Nebl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371C10.T7 (MSMg01no371_c10.b1)MSMg01-371C10.TJ (MSMg01no371_c10.g1)
ACCAG477729AG477730
length766724
length of high quality
(start - end)		470 (71 - 540)---
definitionCHROMAT_FILE: MSMg01no371_c10.b1 PHD_FILE: MSMg01no371_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:27 2005CHROMAT_FILE: MSMg01no371_c10.g1 PHD_FILE: MSMg01no371_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTGGTCTCTATCAGGGCTGCTGTTTAATC
ACAATTCTTTATTCCTATTTGAATTTTACTTTGACAAACATGTGCATATG
CCCACTTCTGGTAAGTTTATGACAGATCGAGTATATTGATGGTAGCCATG
AAATTTTCAGGGTGTGGAATCACTTGAGCAAGAACCTGCTGTTGAACCTA
GACTGTAATCAAATAATTTATTCAGTTTAGTGCTCACTTAACCAACAGCT
ATAGAAGAATTTCAAATTAGTAGGATTTGATTATTTATTTATTTATTTAT
TTATTTATTTATTTATTTTTACTTTTCACTTCACATCCTGCTTACTGCTC
CCTCCCAGTCACCCCCTCCCACAATCCTTCCCCCTATCCCCCACTCCTTT
TCTCCTCTGAATAGGTGGGAGTCCTCTTGGGCACCCCCCAACCTTGGCGC
ATCAAGTCTCTGAGAGGCTAGGCACATCGTCCTCTCTCACTGAGGCCCAG
CTAGAGAACATATCCCATGTACAGGCTACAGCCTTTTGGGACAGCCACTG
CTTCAGTTGTCAAAGAAAATACATGGCATACAATATGTTCCAAGTGCAGT
TGACTACTCATATTAATCCGGGTAATTTAAAGCCCATACTTTAGTTGTCC
TCTACTCCCGAACCCGGGTGGGGTGGTGGTTTCTCTCCCCCCCACTCGGT
TTTCTTCTCTCCTGCG

CACCACACCNNNTTTATANNNNNNTTTCATAAXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTTATTTTCATACCACAT
TTTTTAAATGGGGTTAATTTGATNNTTTCTGGAGTCCAGCTTTCTTGAAG
TTCTTCTAATATATATATTATATTATNNATATATTATATATAATATTTGG
GAATATTAAGTCCCCCCTAATCTTGAATTTTTTGGGAAAAAGGGGTAAAA
AGGGGATACCCTTTTTTCCCAAAAATCTTGTGGGGTGGGGGGGGGGGCCC
CCCTTTTTTTTTTTTGGTGGCGCCCTCAATAAAAATGTAGGAGAAAACAC
TATCGTGGGGGCCCTTCCACCCACCCTTTTTTTTTTTTTTATTCTTCCCC
TCCCCCTCCCCCCATATCTTGTTTTACATTAGGTTAATTATCACAATTTT
TTTTTTTCCCCTCTTCTCCTATTTCTCTCTCTCTTTTTGTCTTCTCTCTT
TTCACATTCCCATATATTTAATCCTCTTATATCCATTTACTTTAAATATA
ATATATTCCTATCTATTTATTTTTCTTCTTAGCAATTATTACTTTTTTAT
TTTGCTTTCTTATTTCCTTTTCTTTTTTTCCTAACACAAAACATTTTTAC
TTTTATTTCTTTTTCTTTTTCTTTTACATCTAACTTTAATTTTTTATAAC
ACTTTTCTTATATTATCTTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_c10.b1 MSMg01no371_c10.b1 CHROMAT_FILE:
MSMg01no371_c10.b1 PHD_FILE: MSMg01no371_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:27 2005
         (470 letters)



>mm_chr2_16274891_16275760
          Length = 870

 Score =  797 bits (412), Expect = 0.0
 Identities = 450/470 (95%), Gaps = 12/470 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggtctctatcagggctgctgtttaatcacaattctttattcctatttgaattttact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 attggtctctatcagggctgctgtttaatcacaattctttattcctatttgaattttact 401

                                                                       
Query: 61  ttgacaaacatgtgcatatgcccacttctggtaagtttatgacagatcgagtatattgat 120
           ||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttgacaaacttgtacatatgtccacttctggtaagtttatgacagatcgagtatattgat 341

                                                                       
Query: 121 ggtagccatgaaattttcagggtgtggaatcacttgagcaagaacctgctgttgaaccta 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 340 ggtagccatgaaattttcagggtgtggaatcacttgagcaagaacctgatgttgaaccta 281

                                                                       
Query: 181 gactgtaatcaaataatttattcagtttagtgctcacttaaccaacagctatagaagaat 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gactgcaatcaaataatttattcagtttagtgctcacttaaccaacagctatagaagaat 221

                                                                       
Query: 241 ttcaaattagtaggatttgattatttatttatttatttatttatttatttatttattttt 300
            |||||||||||||||||||            ||||||||||||||||||||||||||||
Sbjct: 220 ctcaaattagtaggatttga------------ttatttatttatttatttatttattttt 173

                                                                       
Query: 301 acttttcacttcacatcctgcttactgctccctcccagtcaccccctcccacaatccttc 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 acttttcacttcacatcctacttactgctccctcccagtcaccccctcccacaatccttc 113

                                                                       
Query: 361 cccctatcccccactccttttctcctctgaataggtgggagtcctcttgggcacccccca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 112 cccctatcccccactccttttctcctctgaataggtgggagtcctcttgggcactcccca 53

                                                             
Query: 421 accttggcgcatcaagtctctgagaggctaggcacatcgtcctctctcac 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  accttggcgcatcaagtctctgagaggctaggcacatcgtcctctctcac 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |