Query= MSMg01no371_k14.b1 MSMg01no371_k14.b1 CHROMAT_FILE:
MSMg01no371_k14.b1 PHD_FILE: MSMg01no371_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:11 2005
(485 letters)
>mm_chr2_178691448_178692332
Length = 885
Score = 783 bits (405), Expect = 0.0
Identities = 408/409 (99%)
Strand = Plus / Minus
Query: 77 cggtctccatagtcaggaagcagagagagatgaacttggggctcagctgctgtacacagt 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 cggtctccatagtcaggaagcagagagagatgaacttggggctcagctgctgtacacagt 826
Query: 137 ctccgtctgaggaatggcagatcccacattcagggtgcgtctttccatctcagtgagcct 196
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 ctccgtctgaggagtggcagatcccacattcagggtgcgtctttccatctcagtgagcct 766
Query: 197 aatcttgatacctcctcctgctcagaggtctcagcaaggaggttctgcatcctatcaagg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 aatcttgatacctcctcctgctcagaggtctcagcaaggaggttctgcatcctatcaagg 706
Query: 257 agacagtcagtatgaaccatgaaggcaccactttcttgctgattttaaagacatttagag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agacagtcagtatgaaccatgaaggcaccactttcttgctgattttaaagacatttagag 646
Query: 317 aatgttctccctggtttttaggttcatctacagatcactgtgacacccctagtgtgaaga 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aatgttctccctggtttttaggttcatctacagatcactgtgacacccctagtgtgaaga 586
Query: 377 agacacacactcactctagccatgcctgtgagagcagctctgactgacaacccaattgtg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agacacacactcactctagccatgcctgtgagagcagctctgactgacaacccaattgtg 526
Query: 437 gcagccgcaggctgtgtcctcgtacgttactggagctttgtcatcatgt 485
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gcagccgcaggctgtgtcctcgtacgttactggagctttgtcatcatgt 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_k14.g1 MSMg01no371_k14.g1 CHROMAT_FILE:
MSMg01no371_k14.g1 PHD_FILE: MSMg01no371_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:12 2005
(542 letters)
>mm_chr2_178605336_178606277
Length = 942
Score = 777 bits (402), Expect = 0.0
Identities = 488/538 (90%), Gaps = 36/538 (6%)
Strand = Plus / Plus
Query: 5 gaattctctctttgttacaggtcagttccttccacattctcatcctaactggcacattgt 64
|||||| ||||||| | ||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 205 gaattccctctttgggaaaggtcagtttcttctacactctcatcctaactggcacattgt 264
Query: 65 aggcacttgagactgttgccttgttcatttgttgccaaactctagggagttcaacaaacc 124
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 aggcacttgagactattgccttgttcagttgttgccaaactctagggagttcaacaaacc 324
Query: 125 cagggctttgtagagtagggtctgccatctctccctggtctgccatctcaccatggtctg 184
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagggctttgtagagtagggtctgccatctctccctggtctgc----------------- 367
Query: 185 tcatctctccttggtctgccatctcaccctggtctgccatctcaccatggtctgtcatct 244
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 -catctctccctggtctgccatctcaccctggtctgccatctcaccatggtctgtcatct 426
Query: 245 caccctggacctcatagaggcctttgtgcgtgtccttggctcacatctccctagctcaat 304
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 427 caccctggaccccatagaggcctttgtgcgtgtccttggctcacatcttcctagctcaat 486
Query: 305 tttggttactctccctccattctagcttttcttgctgcctttgcctcagtctctctatct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tttggttactctccctccattctagcttttcttgctgcctttgcctcagtctctctatct 546
Query: 365 gttccagtttgttccaagctcctaccctgctctatccaggccaagtccccatgtagccat 424
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 547 gttccagtttgttccaagctcctaccctgctctatccag-ccaagttcccatgtagccaa 605
Query: 425 ccagcttcatccttggctgtttcctctgcatctctattgctcttttctgctccaggaaca 484
|||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 606 ccagcttcatcctt------ttc-----------tattgctcttttctgctccaggaaca 648
Query: 485 ttcttactttactatccttgagccttgtactaaaacccctgatccacccttctcccat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttcttactttactatccttgagccttgtactaaaacccctgatccacccttctcccat 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
