BAC Information

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BAC

Clone NameMSMg01-371P02
Chromosome2 (Build37)
Map Location 113,822,997 - 113,823,499
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr3, 4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526
Downstream geneGja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4, LOC100043219, LOC100043222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371P02.T7 (MSMg01no371_p02.b1)MSMg01-371P02.TJ (MSMg01no371_p02.g1)
ACCAG478325AG478326
length761782
length of high quality
(start - end)		503 (72 - 574)369 (42 - 410)
definitionCHROMAT_FILE: MSMg01no371_p02.b1 PHD_FILE: MSMg01no371_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:34 2005CHROMAT_FILE: MSMg01no371_p02.g1 PHD_FILE: MSMg01no371_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGAGACGTTGGCTAAGTATGTTTGACAC
ATTTTTGCATGTGAATCGTAAATATTGGCTGATTCCTTTCAGAAGCTGCT
GTCATTCAGAAATAGATGCTGAGTGAAGCCTTCCTTCTCTCCCTAGGAAG
AACGGGGCTTTCAGTAGACAGGGTGTGGGAGGCCAGTCTCCAGCACGGAG
AGGAGAGTAACGAAAATGACAGTTCTTTACCTCTGTGTGGCATTTTGCAG
TTAGCCAGATACCTCCCATCCACGATCTCATTGGATGTTCATGCTTCTCT
CTGAGGTAGGTATTAGGGCTGGCAGCTATCTCCATCCCAGGAATAAGGGT
GCTGCATACACCAGAGTTCAATGATGACAGAAAAGCAAGCAAGCAAGCAA
ACAAACAAACCCAGAAGTGGGGATTTCCTGAGAGTGATAGGTGCATCCTG
GCATTACTGGGGCTGATCCCTCAGTGCTAGGCTGTGTCCCACCACCCTGC
TGAGCCCAGCATTTTATTTCTTATCTTGGTTTTTTTTTTTTTTGGGTTTT
TTTCCCCGTGGGACTTAATTACGAATCCTTCGTATAAGGGATAGAGGGAG
GTATGCCCTCTAATTTTTCCCTTACTCTATTTCTTCTGTTTACACCTCTT
CTTTTTTCGTTCTTCTTTTCCCTCCTACTTTCTTTGCCTTTATCCTTCGT
TACTCTCTCCT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTATTTAATTTGATGGTTCCTTCTCTTTTTAATATATATTTTATGCATA
ACATATATGTATATGTTTAATTGCATGCATACATAAATACATGGTACTCA
GGCTGGTCTTAAACTCCCAAGATCAGGTGATTCCTCTGTCTGAGTCTGAT
GAATAGCTAGGACTACAGATCTCTGCCTTTATACTTTGTGGGAGTATATT
TTTCTTGATATTTTCTTTTTTTAAAAAGTCTCCCAACTTGTAAAGACAAG
GTTGAGGTGGGTATGGGAGGAGAAAAAAAAAGTGATTGAAGTATCTTATG
TACTTGTATGAAAGTATAATAATAGAGTTAATTATTTTGTACAACTAATA
CACACCCAAATGCATAGAACAAAATGAACCTCTTATAGTTATAAAAGAAA
TCAGAGATAGCTAAATCAGTAAAGAAAATGGTACACATAATGAGTAAGGC
GATGGAATACGGTTGTATTACTATTTTAGCTCCGATGAAAGTGTTTTACT
ATTGTAACGACCAAATGTTTTCAACCTGTATTGTCCTTAATTAATTCACA
ATATCTTTAATTCTTTTATTTTTATGCCTCTTTCATTCTTTTTCTAATTT
TTTGTAGCTCTCTCCTTTCCTCTCTTCTTCTTTTCTCCCTCTCTTCCTTC
TTTCTCTTATTCTCCATCCGTTCTTTACACTTTACACTTCCTTCTTCATT
CCTTTCCCCTCCCTTATTTATTTAATTATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_p02.b1 MSMg01no371_p02.b1 CHROMAT_FILE:
MSMg01no371_p02.b1 PHD_FILE: MSMg01no371_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:34 2005
         (503 letters)



>mm_chr2_113822939_113823841
          Length = 903

 Score =  965 bits (499), Expect = 0.0
 Identities = 502/503 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagacgttggctaagtatgtttgacacatttttgcatgtgaatcgtaaatattggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgagacgttggctaagtatgtttgacacatttttgcatgtgaatcgtaaatattggctg 502

                                                                       
Query: 61  attcctttcagaagctgctgtcattcagaaatagatgctgagtgaagccttccttctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attcctttcagaagctgctgtcattcagaaatagatgctgagtgaagccttccttctctc 442

                                                                       
Query: 121 cctaggaagaacggggctttcagtagacagggtgtgggaggccagtctccagcacggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaggaagaacggggctttcagtagacagggtgtgggaggccagtctccagcacggaga 382

                                                                       
Query: 181 ggagagtaacgaaaatgacagttctttacctctgtgtggcattttgcagttagccagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagagtaacgaaaatgacagttctttacctctgtgtggcattttgcagttagccagata 322

                                                                       
Query: 241 cctcccatccacgatctcattggatgttcatgcttctctctgaggtaggtattagggctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcccatccacgatctcattggatgttcatgcttctctctgaggtaggtattagggctg 262

                                                                       
Query: 301 gcagctatctccatcccaggaataagggtgctgcatacaccagagttcaatgatgacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagctatctccatcccaggaataagggtgctgcatacaccagagttcaatgatgacaga 202

                                                                       
Query: 361 aaagcaagcaagcaagcaaacaaacaaacccagaagtggggatttcctgagagtgatagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagcaagcaagcaagcaaacaaacaaacccagaagtggggatttcctgagagtgatagg 142

                                                                       
Query: 421 tgcatcctggcattactggggctgatccctcagtgctaggctgtgtcccaccaccctgct 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 141 tgcatcctggcattactggggctgatccctcagtgttaggctgtgtcccaccaccctgct 82

                                  
Query: 481 gagcccagcattttatttcttat 503
           |||||||||||||||||||||||
Sbjct: 81  gagcccagcattttatttcttat 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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