TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTATATCCCTGGGAAGGTTGTTGCCTCTTTGTCTGTCTAGGAGTGTTA
ATAAATATTCTAATATCCTCTTTAGCCTCCTATAATACATCTCAGAACAC
TATTAAAGCACCAACTTTTCTAAAATCTAGTATCTCAAATCAGAAGTCCC
TGAAAGCATAGATGTTTGGTCTATACCATTAATCTTAACAGTAGCACTTT
TGTGTAGCTAAAGAGATAAAGTGACTATATTTATAAATTTTCTAGTGATT
TATAATTTTAGTTTTTTGTTTTCTTTTCTTTTGGTTTTGTTTTTTTTTAG
TAATTATTTGAATATTGTTTTTGTTTAATTAAGAAACTATGTCAGAGAGT
TAAGATTTTAGTTAATTTGATGGATACCGTAGCATGACTTGATCTGGCAT
CATGTTGCATGGCCTTATGAAAGCACACTGCCAGGAAGAATAAGGTCTTT
TTGTCTTTTTACTGTTTACCGAGAAATAACCTTTAAGGCCTATGCATGCT
GCTACTGGTAAAATGAATTTACTTTACTTTTTCGTTTCCTGTCGGCTGCC
GCTAATCTTCTAAGTAATGCTGCGTCTAATTGAGCATTCTTGACTTTTTC
TTTTCCTATCACCCACCCGCATTATGCAGCTAAATACAGGCCTGTTGGGC
TAAATTCTTCTTTCCCGCATATTTTCCAACACCATCACATTGTGGCGTTA
ATGTCG

ACAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAG
ATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTTCTG
GACTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTTGTCCTGG
TTTCTGTTAGTAGGATTCTTACATTTACCTTTCGCCATCTGGCAATCTCT
GGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGAT
TTTGTTACCCTCTTTTCTCAGGCGTGGGAGACAAGCTCTCTCCTCTGAGT
TTCTGTGGTCAGAGCAGTCTCTGCAGGCAAGCTCTCCTCTTTCAGGGAAG
GTGTATAGCTATCTGGTGTTTGGACCTCCTCCTTGTTGAAGGTGAATGTC
CTAAATATTTACCTTTCCCATATTCTGTGTTGTTTTGGCCCCTTATTCCG
CCCTTTTCCCCGTTTTTCTCTTTTTTTTCCCCTTCCCTTTTTTTTCCTCC
TCCCTCCCTTCTTTATCCCTCCCGCCTCTCTTTTTTTTCTCGCCCCCCTC
TTCTTTCTTTTTTTTTTCCTTTTTTTTTCCCCTTTTACAATCCTCCTCTT
TCCTTACCCTCTTTTTTTTTTCCTTTTTTCCCCCTTCTTATTCCCCCTTT
TTTTCCCGCCCTTTCTTTCCTTCCTTCTTGCCTCCCCCCTCCCCCTTATT
CCCCCCTCTTTTCTTTTTCTCTCCTCTCCTCCCCG

Query= MSMg01no372_f18.b1 MSMg01no372_f18.b1 CHROMAT_FILE:
MSMg01no372_f18.b1 PHD_FILE: MSMg01no372_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:05 2005
         (437 letters)



>mm_chr2_97856767_97857603
          Length = 837

 Score =  774 bits (400), Expect = 0.0
 Identities = 426/438 (97%), Gaps = 7/438 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttatatccctgggaaggttgttgcctctttgtctgtctaggagtgttaataaa 64
           |||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 202 gaattctttatagccctgggaaggttgttgcctctttgtctgtct--gagtgttaataaa 259

                                                                       
Query: 65  tattctaatatcctctttagcctcctataatacatctcagaacactattaaagcaccaac 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 260 tattctaatatcctctttagcctcctataatacgtctcagaacactattaaagcaccaac 319

                                                                       
Query: 125 ttttctaaaatctagtatctcaaatcagaagtccctgaaagcatagatgtttggtctata 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 ttttctaaaatctagtatctcaaatcagaagttcctgaaagcatagatgtttggtctata 379

                                                                       
Query: 185 ccattaatcttaacagtagcacttttgtgtagctaaagagataaagtgactatatttata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccattaatcttaacagtagcacttttgtgtagctaaagagataaagtgactatatttata 439

                                                                       
Query: 245 aattttctagtgatttataattttagttttttgttttcttttcttttggttttgtttttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aattttctagtgatttataattttagttttttgttttcttttcttttggttttgtttttt 499

                                                                       
Query: 305 ttt-----agtaattatttgaatattgtttttgtttaattaagaaactatgtcagagagt 359
           |||     ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttttttttagtaattatttgaatattgtttttgtttaattaagaaactatgtcagagagt 559

                                                                       
Query: 360 taagattttagttaatttgatggataccgtagcatgacttgatctggcatcatgttgcat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 560 taagattttagttaatttgatggataccgtagcatgacttgatctggcatcatgttgtat 619

                             
Query: 420 ggccttatgaaagcacac 437
           || |||||||||||||||
Sbjct: 620 ggtcttatgaaagcacac 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)