MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-372G12
Chromosome	2 (Build37)
Map Location	179,777,816 - 179,778,340
singlet/doublet	singlet
Overlap gene	Ss18l1
Upstream gene	LOC100043168, LOC100039413, Cdh4, Taf4a, Lsm14b, Psma7
Downstream gene	Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100043168 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043168
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 71 ESTs, 2 Proteins

name	LOC100039413 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039413
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Cdh4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12561 MGI:99218
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Taf4a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228980 MGI:2152346
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lsm14b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241846 MGI:3040677
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Psma7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26444 MGI:1347070
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ss18l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269397 MGI:2444061
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gtpbp5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52856 MGI:106565
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	Hrh3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99296 MGI:2139279
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Osbpl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228983 MGI:2442832
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039470 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039470
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Adrm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56436 MGI:1929289
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lama5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16776 MGI:105382
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rps21 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66481 MGI:1913731
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cables2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:252966 MGI:2182335
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC066135 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:271887 MGI:3606212
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gata5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14464 MGI:109497
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG622283 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622283 MGI:3649026
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Slco4a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108115 MGI:1351866
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ntsr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18216 MGI:97386
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1600027N09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73247 MGI:1920497
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ogfr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72075 MGI:1919325
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col9a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12841 MGI:894686
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tcfl5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:277353 MGI:2672878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dido1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23856 MGI:1344352
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	2310003C23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76425 MGI:1923675
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700019H03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228993 MGI:1919107
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bhlhb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140489 MGI:2153710
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	OTTMUSG00000016394 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:676369 MGI:3650817
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Ythdf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228994 MGI:1917431
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Birc7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329581 MGI:2676458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 Proteins

name	C030019F02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58237 MGI:1915372
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039607 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039607
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 17 ESTs

name	Arfgap1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228998 MGI:2183559
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col20a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73368 MGI:1920618
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 1 Protein

name	Chrna4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11438 MGI:87888
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043168 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250515 GeneID:100043168
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 71 ESTs, 2 Proteins product : similar to Wilms tumor 1 associated protein transcript_id : XM_001480123.1

name	Cdh4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753375 GeneID:12561 MGI:99218
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cadherin 4 transcript_id : NM_009867.1

name	Taf4a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487353 GeneID:228980 MGI:2152346
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor transcript_id : NM_001081092.1

name	Lsm14b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801916 GeneID:241846 MGI:3040677
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LSM14 homolog B (SCD6, S. cerevisiae) transcript_id : NM_177727.3

name	Psma7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7106388 GeneID:26444 MGI:1347070
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proteasome (prosome, macropain) subunit, alpha type 7 transcript_id : NM_011969.1

name	Ss18l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328462 GeneID:269397 MGI:2444061
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synovial sarcoma translocation gene on chromosome 18-like 1 transcript_id : NM_178750.4

name	Gtpbp5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134032024 GeneID:52856 MGI:106565
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTP binding protein 5 transcript_id : NM_181424.3

name	Gtpbp5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134032034 GeneID:52856 MGI:106565
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTP binding protein 5 transcript_id : NM_001083328.1

name	Gtpbp5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134031985 GeneID:52856 MGI:106565
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTP binding protein 5 transcript_id : NM_028422.1

name	Gtpbp5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134031949 GeneID:52856 MGI:106565
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTP binding protein 5 transcript_id : NM_001083329.1

name	Hrh3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388890 GeneID:99296 MGI:2139279
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histamine receptor H 3 transcript_id : NM_133849.2

name	Osbpl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802025 GeneID:228983 MGI:2442832
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : oxysterol binding protein-like 2 transcript_id : NM_144500.3

name	Adrm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130567 GeneID:56436 MGI:1929289
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adhesion regulating molecule 1 transcript_id : NM_019822.3

name	Lama5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487154 GeneID:16776 MGI:105382
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : laminin, alpha 5 transcript_id : NM_001081171.1

name	Rps21 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114051544 GeneID:66481 MGI:1913731
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein S21 transcript_id : NM_025587.2

name	Cables2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124053454 GeneID:252966 MGI:2182335
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Cdk5 and Abl enzyme substrate 2 transcript_id : NM_145851.2

name	BC066135 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347813 GeneID:271887 MGI:3606212
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC066135 transcript_id : NM_173031.2

name	Gata5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7110596 GeneID:14464 MGI:109497
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GATA binding protein 5 transcript_id : NM_008093.1

name	EG622283 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94367768 GeneID:622283 MGI:3649026
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : predicted gene, EG622283 transcript_id : XM_896994.2

name	Slco4a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22507334 GeneID:108115 MGI:1351866
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier organic anion transporter family, member 4a1 transcript_id : NM_148933.1

name	Ntsr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801633 GeneID:18216 MGI:97386
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neurotensin receptor 1 transcript_id : NM_018766.2

name	1600027N09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625964 GeneID:73247 MGI:1920497
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1600027N09 gene transcript_id : NM_028479.1

name	Ogfr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982603 GeneID:72075 MGI:1919325
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : opioid growth factor receptor transcript_id : NM_031373.2

name	Col9a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112363118 GeneID:12841 MGI:894686
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type IX, alpha 3 transcript_id : NM_009936.2

name	Tcfl5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342352 GeneID:277353 MGI:2672878
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor-like 5 (basic helix-loop-helix) transcript_id : NM_178254.2

name	Dido1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76096374 GeneID:23856 MGI:1344352
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : death inducer-obliterator 1 transcript_id : NM_175551.3

name	Dido1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51571540 GeneID:23856 MGI:1344352
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : death inducer-obliterator 1 transcript_id : NM_177852.3

name	Dido1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51556455 GeneID:23856 MGI:1344352
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : death inducer-obliterator 1 transcript_id : NM_011805.2

name	2310003C23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037442 GeneID:76425 MGI:1923675
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310003C23 gene transcript_id : NM_029607.1

name	1700019H03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125347350 GeneID:228993 MGI:1919107
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700019H03 gene transcript_id : NM_183161.3

name	Bhlhb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142380234 GeneID:140489 MGI:2153710
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : basic helix-loop-helix domain containing, class B4 transcript_id : NM_080641.4

name	OTTMUSG00000016394 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250517 GeneID:676369 MGI:3650817
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000016394 transcript_id : XM_001480261.1

name	Ythdf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40789291 GeneID:228994 MGI:1917431
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : YTH domain family 1 transcript_id : NM_173761.3

name	Birc7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250519 GeneID:329581 MGI:2676458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 Proteins product : baculoviral IAP repeat-containing 7 (livin) transcript_id : XM_283820.5

name	C030019F02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32129277 GeneID:58237 MGI:1915372
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C030019F02 gene transcript_id : NM_021426.3

name	LOC100039607 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250503 GeneID:100039607
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 17 ESTs product : hypothetical protein LOC100039607 transcript_id : XM_001473184.1

name	Arfgap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542138 GeneID:228998 MGI:2183559
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ADP-ribosylation factor GTPase activating protein 1 transcript_id : NM_145760.2

name	Col20a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149250505 GeneID:73368 MGI:1920618
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 1 Protein product : collagen, type XX, alpha 1 transcript_id : XM_001473208.1

name	Chrna4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328445 GeneID:11438 MGI:87888
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cholinergic receptor, nicotinic, alpha polypeptide 4 transcript_id : NM_015730.4

name	LOC100043168 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250516 GeneID:100043168
definition	codon_start : 1 product : similar to Wilms tumor 1 associated protein protein_id : XP_001480173.1

name	Cdh4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753376 CCDS:CCDS17164.1 GeneID:12561 MGI:99218
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IDA]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0007156 - homophilic cell adhesion [Evidence IEA]; GO:0045773 - positive regulation of axon extension [Evidence IDA] codon_start : 1 note : retina cadherin product : cadherin 4 protein_id : NP_033997.1

name	Taf4a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487354 GeneID:228980 MGI:2152346
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence TAS]; GO:0005669 - transcription factor TFIID complex [Evidence IEA] [Evidence ISS] GO_function : GO:0016251 - general RNA polymerase II transcription factor activity [Evidence TAS]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016986 - transcription initiation factor activity [Evidence IEA] GO_process : GO:0001541 - ovarian follicle development [Evidence IMP]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006366 - transcription from RNA polymerase II promoter [Evidence TAS]; GO:0006352 - transcription initiation [Evidence IEA] codon_start : 1 note : TATA box binding protein (TBP)-associated factor, RNA polymerase II, C1, 130kd product : TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_id : NP_001074561.1

name	Lsm14b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244196 CCDS:CCDS17165.1 GeneID:241846 MGI:3040677
definition	codon_start : 1 product : LSM14 homolog B protein_id : NP_808395.1

name	Psma7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7106389 CCDS:CCDS17166.1 GeneID:26444 MGI:1347070
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0005839 - proteasome core complex (sensu Eukaryota) [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0004175 - endopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004298 - threonine endopeptidase activity [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 product : proteasome (prosome, macropain) subunit, alpha type 7 protein_id : NP_036099.1

name	Ss18l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328463 CCDS:CCDS17167.1 GeneID:269397 MGI:2444061
definition	GO_function : GO:0003677 - DNA binding [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS]; GO:0003700 - transcription factor activity [Evidence ISS] GO_process : GO:0016358 - dendrite development [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence ISS] codon_start : 1 exception : mismatches in translation product : synovial sarcoma translocation gene on chromosome 18-like 1 protein_id : NP_848865.3

name	Gtpbp5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134032035 GeneID:52856 MGI:106565
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : GTP binding protein 5 protein_id : NP_001076797.1

name	Gtpbp5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134031950 GeneID:52856 MGI:106565
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : GTP binding protein 5 protein_id : NP_001076798.1

name	Gtpbp5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134031986 GeneID:52856 MGI:106565
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : GTP binding protein 5 protein_id : NP_082698.1

name	Gtpbp5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134032025 GeneID:52856 MGI:106565
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : GTP binding protein 5 protein_id : NP_852089.2

name	Hrh3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527066 CCDS:CCDS17169.1 GeneID:99296 MGI:2139279
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : histamine receptor H 3 protein_id : NP_598610.1

name	Osbpl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625879 CCDS:CCDS17170.1 GeneID:228983 MGI:2442832
definition	GO_process : GO:0006869 - lipid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : oxysterol-binding protein-related protein 2; OSBP-related protein 2; oxysterol-binding protein-like 2 product : oxysterol-binding protein-like protein 2 protein_id : NP_653083.2

name	Adrm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981027 CCDS:CCDS17171.1 GeneID:56436 MGI:1929289
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 note : glycoprotein 110 product : adhesion regulating molecule 1 protein_id : NP_062796.2

name	Lama5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487155 GeneID:16776 MGI:105382
definition	GO_component : GO:0005605 - basal lamina [Evidence IEA]; GO:0005604 - basement membrane [Evidence IDA]; GO:0031012 - extracellular matrix [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] [Evidence IDA]; GO:0005606 - laminin-1 [Evidence IEA] GO_function : GO:0005201 - extracellular matrix structural constituent [Evidence IEA]; GO:0005178 - integrin binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005102 - receptor binding [Evidence IEA] GO_process : GO:0048754 - branching morphogenesis of a tube [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0030324 - lung development [Evidence IMP]; GO:0001738 - morphogenesis of a polarized epithelium [Evidence IMP]; GO:0016331 - morphogenesis of embryonic epithelium [Evidence IMP]; GO:0007517 - muscle development [Evidence IMP]; GO:0001755 - neural crest cell migration [Evidence IMP]; GO:0042475 - odontogenesis (sensu Vertebrata) [Evidence IMP]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0030155 - regulation of cell adhesion [Evidence IEA]; GO:0030334 - regulation of cell migration [Evidence IEA]; GO:0042127 - regulation of cell proliferation [Evidence IMP]; GO:0045995 - regulation of embryonic development [Evidence IEA]; GO:0007431 - salivary gland development [Evidence IMP]; GO:0001658 - ureteric bud branching [Evidence IMP] codon_start : 1 product : laminin, alpha 5 protein_id : NP_001074640.1

name	Rps21 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21536222 GeneID:66481 MGI:1913731
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence ISS] [Evidence IEA] GO_function : GO:0043022 - ribosome binding [Evidence ISS]; GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0008283 - cell proliferation [Evidence ISS]; GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 product : ribosomal protein S21 protein_id : NP_079863.1

name	Cables2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124053455 GeneID:252966 MGI:2182335
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0016538 - cyclin-dependent protein kinase regulator activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0051726 - regulation of cell cycle [Evidence IEA]; GO:0051302 - regulation of cell division [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA] codon_start : 1 product : Cdk5 and Abl enzyme substrate 2 protein_id : NP_665850.2

name	BC066135 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370552 CCDS:CCDS17174.1 GeneID:271887 MGI:3606212
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC271887 protein_id : NP_766619.1

name	Gata5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7110597 CCDS:CCDS17175.1 GeneID:14464 MGI:109497
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045941 - positive regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : GATA-binding protein 5 product : GATA binding protein 5 protein_id : NP_032119.1

name	EG622283 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82888759 GeneID:622283 MGI:3649026
definition	codon_start : 1 product : hypothetical protein protein_id : XP_902087.1

name	Slco4a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22507335 CCDS:CCDS17176.1 GeneID:108115 MGI:1351866
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : solute carrier family 21 (organic anion transporter), member 12 product : solute carrier organic anion transporter family, member 4a1 protein_id : NP_683735.1

name	Ntsr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055296 CCDS:CCDS17177.1 GeneID:18216 MGI:97386
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0008188 - neuropeptide receptor activity [Evidence TAS]; GO:0016492 - neurotensin receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0008344 - adult locomotory behavior [Evidence IGI]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : neurotensin receptor 1 protein_id : NP_061236.1

name	1600027N09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625965 CCDS:CCDS17178.1 GeneID:73247 MGI:1920497
definition	GO_component : GO:0043189 - H4/H2A histone acetyltransferase complex [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0001558 - regulation of cell growth [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : MRG-binding protein protein_id : NP_082755.1

name	Ogfr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982604 CCDS:CCDS17179.1 GeneID:72075 MGI:1919325
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0001558 - regulation of cell growth [Evidence IEA] codon_start : 1 exception : mismatches in translation product : opioid growth factor receptor protein_id : NP_113550.2

name	Col9a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112363119 CCDS:CCDS17180.1 GeneID:12841 MGI:894686
definition	GO_component : GO:0005581 - collagen [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0030020 - extracellular matrix structural constituent conferring tensile strength [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : procollagen, type IX, alpha 3 protein_id : NP_034066.2

name	Tcfl5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30142703 CCDS:CCDS17181.1 GeneID:277353 MGI:2672878
definition	GO_component : GO:0001673 - male germ cell nucleus [Evidence IDA]; GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence ISS]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0045595 - regulation of cell differentiation [Evidence ISS]; GO:0042127 - regulation of cell proliferation [Evidence ISS]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence ISS] codon_start : 1 exception : mismatches in translation note : factor in the germline beta; FIG beta product : transcription factor-like 5 protein protein_id : NP_839985.1

name	Dido1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:76096375 CCDS:CCDS17182.1 GeneID:23856 MGI:1344352
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; death inducer-obliterator-2; death inducer-obliterator-3 product : death inducer-obliterator 1 isoform 3 protein_id : NP_780760.2

name	Dido1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51571541 CCDS:CCDS17183.1 GeneID:23856 MGI:1344352
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; death inducer-obliterator-2; death inducer-obliterator-3 product : death inducer-obliterator 1 isoform 2 protein_id : NP_808520.2

name	Dido1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51556456 CCDS:CCDS17184.1 GeneID:23856 MGI:1344352
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; death inducer-obliterator-2; death inducer-obliterator-3 product : death inducer-obliterator 1 isoform 1 protein_id : NP_035935.2

name	2310003C23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037443 CCDS:CCDS17185.1 GeneID:76425 MGI:1923675
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : RIKEN cDNA 2310003C23 protein_id : NP_083883.1

name	1700019H03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125347351 GeneID:228993 MGI:1919107
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : hypothetical protein LOC228993 protein_id : NP_898984.3

name	Bhlhb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542226 CCDS:CCDS17187.1 GeneID:140489 MGI:2153710
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0046671 - negative regulation of retinal programmed cell death [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0048050 - post-embryonic eye morphogenesis [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : beta-cell E-box transactivating factor 4 product : basic helix-loop-helix domain containing, class B4 protein_id : NP_542372.2

name	OTTMUSG00000016394 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250518 GeneID:676369 MGI:3650817
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480311.1

name	Ythdf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424609 CCDS:CCDS17188.1 GeneID:228994 MGI:1917431
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : YTH domain family 1 protein_id : NP_776122.1

name	Birc7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250520 GeneID:329581 MGI:2676458
definition	codon_start : 1 product : similar to baculoviral IAP repeat-containing 7 (livin) protein_id : XP_283820.5

name	C030019F02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981145 CCDS:CCDS17189.1 GeneID:58237 MGI:1915372
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC58237 protein_id : NP_067401.2

name	LOC100039607 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250504 GeneID:100039607
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473234.1

name	Arfgap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542139 CCDS:CCDS17190.1 GeneID:228998 MGI:2183559
definition	GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0043087 - regulation of GTPase activity [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : ARF1 GAP; ADP-ribosylation factor 1 GTPase activating protein product : ADP-ribosylation factor GTPase activating protein 1 protein_id : NP_665703.2

name	Col20a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149250506 GeneID:73368 MGI:1920618
definition	codon_start : 1 product : collagen, type XX, alpha 1 protein_id : XP_001473258.1

name	Chrna4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542393 CCDS:CCDS17192.1 GeneID:11438 MGI:87888
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IDA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IDA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004889 - nicotinic acetylcholine-activated cation-selective channel activity [Evidence TAS]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007610 - behavior [Evidence IMP]; GO:0007600 - sensory perception [Evidence IMP] [Evidence TAS]; GO:0007271 - synaptic transmission, cholinergic [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : acetylcholine receptor, neuronal, nicotinic, alpha-4 subunit; acetylcholine receptor alpha 4 neural; alpha4 nAChR; a4 nicotinic receptor product : cholinergic receptor, nicotinic, alpha 4 subunit protein_id : NP_056545.3

name	LOC100039413 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039413
definition	number : 1 pseudo : _no_value

name	LOC100039413 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039413
definition	number : 2 pseudo : _no_value

name	LOC100039413 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039413
definition	number : 3 pseudo : _no_value

name	LOC100039413 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039413
definition	number : 4 pseudo : _no_value

name	LOC100039470 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039470
definition	number : 2 pseudo : _no_value

name	LOC100039470 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039470
definition	number : 1 pseudo : _no_value

clone name	MSMg01-348A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-186J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135D20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-363O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108G04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-105I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-204A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269E12
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-372G12.T7 (MSMg01no372_g12.b1)	MSMg01-372G12.TJ (MSMg01no372_g12.g1)
ACC	AG478677	AG478678
length	745	752
length of high quality (start - end)	525 (65 - 589)	214 (318 - 531)
definition	CHROMAT_FILE: MSMg01no372_g12.b1 PHD_FILE: MSMg01no372_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:08 2005	CHROMAT_FILE: MSMg01no372_g12.g1 PHD_FILE: MSMg01no372_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:09 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	AATTTGCGGGCGCTAAACGAATCACTATTCGGAGAGGATCCGCGGAATTC TGTATTTTCCACCAGAATTAGGAAAAGCCAGCGCGTAAGAAAGATGCCTG GAACCGCGAAGGCAAACAGTAAGAAGCTAAAGTGTCCAAGCCAAAACTTA AAGCTTCCTTTTGTTAAAGACGTCCACACACCCACGCAAACGCCTTCTCT GAGAAACTGGCCCAAACTAAAGGATGAAACTGAGAGACTGCAGGACAAAC CTGCGGTGTCTGAAGCCAGGGTGCAGAAGGCGAGGCTCGCGGATACCCAG TGGCCTGAGCGGGGGCGGGGCTGCGCTAGCCTCAAGTCCGCCGCGTGCTG CAAGCTCTGGACAGCGGTGCGGGCTCTGGAAATGGCACGCACACTTTGGA TGCGTTCCTTTGTGCAGGGCACCGCAGTACCTCACAAGAGCGGCCAGCTC GCCGCAGCGGCGCGCCTCCAGGCTGCCTGCTCCCCCTTCTCCACTCGCCA AGCATCGCGCAAAGGCGCGCGACCGTCGCTACCACGGCTGTCAGCAGAGC GCGACAAGCCCCCGCCCCGGCTGGAGGGGCCGCGGGCCCTGGCGTCTCGC TCTGTTGCGTCTGCTGCCTGGGGCGCTCTGTAAGAAGAACGCGCTACGCG CTCCGGGGTCCCCACCCCCTGCGTCCGCCGGGTCCCCGCTGCCATTGTCT CCAATAAAGTTGGCGTAAGTATTTCTTGCGGCCGCGCATAGTCTT	CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXATTGAAACTCCACTGCTGATCCTGGGGCCA GATCCAGGAGCCCCTGCCCTGCTCTCCATACCTAACGGGAGCTAGGGAAG AGGGGGCCACAGGAAAGCAGTTGACCAATAGGGATGACCCTGAACATAGT ACGCCCACTGCGCCCCACACCTTCTTCTGTCTCTATGGAGGAATACACAG GGGTAGAGACTGCCAAACTCAGGTCCACAAGGGCTCAGAGGCGGGTAGTA GACTCTAAAGTTTTGTTGGCCTGCCCCAGCCATGATAAGCCAGGCTTCTT CTGGGTTCCTGCAGTATTTTTCTCAACGTGCTGGACTAGCTTCCTTTCCA GGGTCCTGCTGTCCAGAAGCAAGCCCAGCTCACCCTCTAGTGGCAGGCTG CTGTACACACACATGTACACTACATACATGAACAGAGACCTACAGGTCTG TACACACATATGAATATATAGATATACATGCACACAGGTGTACATACATT CTAACAGGCATTCGTGTGCACACATTCACATGCACGCACATGTGTTCATA TATAAACATACATTANAGAGATGGATACTGAGCACATGGAGGTTTGTTCT GTTGGGTGGAAGCAAGCATGTCCGGCTGTATGCCCCCCATTACCTTATTT CTTTTCATCTTTATTCCCTTTTTTTTCTTTCCCCTCCTTNTCTTGTCTTT TG
quality values	Open. Hide. 8 8 8 10 8 10 10 8 10 15 19 15 19 8 8 8 8 15 7 7 7 7 12 8 13 9 9 9 9 9 9 9 9 9 9 9 8 10 10 13 19 34 39 39 31 28 28 37 32 33 29 23 10 8 8 8 8 8 8 9 9 13 17 15 18 21 29 29 29 29 39 39 47 57 57 57 50 36 36 36 40 40 57 59 59 57 57 57 57 57 48 42 42 37 42 42 42 48 57 54 54 54 54 54 68 68 68 68 57 57 54 57 57 57 57 57 57 57 47 57 57 59 59 57 57 57 57 57 57 57 68 68 57 57 57 57 57 57 57 68 68 68 68 57 57 57 68 57 57 57 68 68 68 68 59 59 59 59 59 59 57 68 57 57 57 57 59 59 59 59 59 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 57 57 57 57 57 59 59 57 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 59 68 68 57 57 57 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 43 43 39 20 14 14 28 28 39 39 43 59 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 62 62 62 62 62 62 57 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 59 59 59 52 52 52 57 57 57 57 57 57 57 57 54 57 57 57 57 68 68 68 68 57 57 54 52 50 43 39 39 43 59 44 59 41 43 42 52 59 59 59 52 52 52 59 59 68 68 59 59 59 59 59 59 59 59 54 54 54 59 57 57 57 59 59 59 59 43 43 43 59 59 68 68 68 57 57 57 47 47 57 57 57 57 54 57 57 54 54 57 57 44 44 28 23 23 28 37 44 59 54 48 47 47 39 39 34 34 33 33 32 35 43 43 44 44 43 48 43 43 34 31 23 23 32 32 28 35 35 37 37 30 30 18 19 19 32 34 34 32 32 28 31 36 36 37 43 59 41 39 40 40 40 37 39 37 37 35 30 30 28 23 22 21 27 39 39 39 39 39 37 19 18 17 17 19 14 12 15 10 10 10 21 16 21 21 28 31 32 25 25 28 19 19 15 23 14 12 17 22 22 28 30 34 28 19 15 22 12 15 14 22 18 16 10 8 8 10 8 8 10 11 11 11 16 14 19 16 8 8 6 6 8 8 10 10 10 10 10 11 10 13 15 17 10 10 10 15 10 11 15 15 11 13 10 10 8 10 10 10 10 21 18 23 8 8 8 8 10 9 10 10 10 10 10 12 22 22 21 13 13 12 13 10 10 10 10 15 11 10 10 10 11 10 10 12 10 9 6 8 6 6 8 8 8 8 9 8 13 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 9 13 10	Open. Hide. 6 6 6 7 7 9 6 7 8 11 14 32 32 29 27 19 19 18 26 26 28 26 18 12 9 9 6 6 6 6 6 6 8 11 13 14 19 12 10 10 10 16 23 32 32 28 28 33 33 41 25 25 9 9 6 6 6 6 6 6 12 16 15 13 11 11 16 19 30 25 30 33 33 46 50 50 53 47 35 30 28 28 30 35 57 57 53 53 50 50 50 50 47 47 44 59 37 31 31 37 37 37 30 33 33 31 31 31 48 48 48 48 59 48 48 48 48 57 57 57 57 57 57 57 53 50 48 48 54 54 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 48 48 48 48 48 48 57 57 57 57 57 57 57 59 59 59 59 57 57 57 57 57 57 57 59 59 68 57 50 50 50 50 50 50 57 57 50 57 50 51 50 50 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 42 32 32 21 24 14 14 24 32 44 57 57 68 68 68 68 68 68 68 68 68 54 57 57 57 68 57 59 48 54 54 59 59 57 54 48 48 57 57 57 57 68 59 57 48 57 48 57 57 59 59 59 59 59 59 59 59 59 59 50 50 50 50 50 47 41 29 11 11 11 8 7 6 6 6 6 15 20 13 28 30 59 59 59 59 59 59 59 59 59 59 57 53 53 53 53 53 57 59 59 59 59 59 59 68 68 68 59 68 68 59 59 59 59 59 59 59 59 59 59 48 43 59 47 59 59 59 59 68 68 68 68 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 57 68 68 68 54 54 57 57 57 57 59 68 59 59 59 57 57 48 48 48 48 48 48 48 48 57 43 43 43 43 46 57 57 43 46 46 48 48 47 59 59 59 59 59 44 41 41 40 59 37 36 36 47 47 48 48 48 48 57 57 57 43 43 43 43 43 48 48 48 48 48 48 48 48 57 59 54 57 48 59 48 48 48 57 48 57 48 48 48 48 48 48 48 42 39 40 39 39 48 39 39 28 36 32 31 31 23 23 23 41 30 30 12 25 25 39 30 30 30 32 32 37 37 46 46 46 41 47 28 30 14 13 12 22 11 11 12 22 28 26 24 16 16 16 21 22 23 23 23 28 23 28 28 26 24 24 32 32 39 30 24 14 12 12 16 22 21 18 28 14 15 14 15 15 32 20 20 15 23 20 11 10 11 17 16 15 19 29 25 30 32 39 32 28 21 17 17 17 15 15 23 23 23 32 24 32 23 23 14 20 11 11 11 18 11 11 11 18 3 0 3 22 22 23 22 22 22 23 24 30 25 25 22 18 11 11 8 6 6 6 10 8 12 12 11 11 12 18 11 11 8 8 6 6 8 8 13 8 12 14 18 11 11 10 9 7 7 9 9 9 10 9 8 8 8 8 8 8 10 8 8 8 8 10 10 10 8 10 9 13 11 9 6 7 6 6 8 10 11 11 12 11 12 12 15 19 23 19 10 8 8 8 8 8 13 6 6 6 8 8 13 11 12 10 18 24 16 8 8 8 8 8 10 12 13 13 9 10 8 8 8 8 3 0 3 8 12 11 9 9 9 9 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no372_g12.b1 MSMg01no372_g12.b1 CHROMAT_FILE:
MSMg01no372_g12.b1 PHD_FILE: MSMg01no372_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:08 2005
         (525 letters)



>mm_chr2_179777616_179778540
          Length = 925

 Score =  992 bits (513), Expect = 0.0
 Identities = 522/525 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattaggaaaagccagcgcgtaagaaagatgcctggaaccgcgaaggcaaacagtaaga 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaattaggaaaagccatcgcgtaagaaagatgcctggaaccgcgaaggcaaacagtaaga 666

                                                                       
Query: 61  agctaaagtgtccaagccaaaacttaaagcttccttttgttaaagacgtccacacaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agctaaagtgtccaagccaaaacttaaagcttccttttgttaaagacgtccacacaccca 606

                                                                       
Query: 121 cgcaaacgccttctctgagaaactggcccaaactaaaggatgaaactgagagactgcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cgcaaacgccttctctgagaaactggcccaaactaaaggatgaaactgagagactgcagg 546

                                                                       
Query: 181 acaaacctgcggtgtctgaagccagggtgcagaaggcgaggctcgcggatacccagtggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 acaaacctgcggtgtctgaagccagggtgcagaaggcgaggctcgcggatacccagtggc 486

                                                                       
Query: 241 ctgagcgggggcggggctgcgctagcctcaagtccgccgcgtgctgcaagctctggacag 300
           | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 485 ccgagcgggggcggggctgcgctagcctcaagtccgccgcgtgcagcaagctctggacag 426

                                                                       
Query: 301 cggtgcgggctctggaaatggcacgcacactttggatgcgttcctttgtgcagggcaccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cggtgcgggctctggaaatggcacgcacactttggatgcgttcctttgtgcagggcaccg 366

                                                                       
Query: 361 cagtacctcacaagagcggccagctcgccgcagcggcgcgcctccaggctgcctgctccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cagtacctcacaagagcggccagctcgccgcagcggcgcgcctccaggctgcctgctccc 306

                                                                       
Query: 421 ccttctccactcgccaagcatcgcgcaaaggcgcgcgaccgtcgctaccacggctgtcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccttctccactcgccaagcatcgcgcaaaggcgcgcgaccgtcgctaccacggctgtcag 246

                                                        
Query: 481 cagagcgcgacaagcccccgccccggctggaggggccgcgggccc 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cagagcgcgacaagcccccgccccggctggaggggccgcgggccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information