Query= MSMg01no372_i13.b1 MSMg01no372_i13.b1 CHROMAT_FILE:
MSMg01no372_i13.b1 PHD_FILE: MSMg01no372_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:18 2005
(534 letters)
>mm_chr2_41171046_41171979
Length = 934
Score = 903 bits (467), Expect = 0.0
Identities = 470/471 (99%)
Strand = Plus / Minus
Query: 1 tctccatataagatgttagctgtgggtttctcatacatggcttttgatatgtttgttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tctccatataagatgttagctgtgggtttctcatacatggcttttgatatgtttgttatt 412
Query: 61 ctttatgagaataacagaatatcttcatattttctgtgtcagatatttattatttccggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctttatgagaataacagaatatcttcatattttctgtgtcagatatttattatttccggc 352
Query: 121 tgtggactgggtatgaatttggtttgttttattttcaaatttttgagttatatcaatatg 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgtggactaggtatgaatttggtttgttttattttcaaatttttgagttatatcaatatg 292
Query: 181 tcacttatttgtaatttttttaacatatgaatttagagagctgtgcgtgatagcacatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tcacttatttgtaatttttttaacatatgaatttagagagctgtgcgtgatagcacatgc 232
Query: 241 ctttaatctcagcacttgggaggcaaagggcggttgaatttctgagttcgaggccagcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ctttaatctcagcacttgggaggcaaagggcggttgaatttctgagttcgaggccagcct 172
Query: 301 ggtctacagagtgaattcaaagatagccaggactacacagagaaaccctgtctcgaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ggtctacagagtgaattcaaagatagccaggactacacagagaaaccctgtctcgaaaaa 112
Query: 361 ccataaaacaaaacaaaaacaaaacaaaaaacaaacaaaaaaaaccacttaatgcattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ccataaaacaaaacaaaaacaaaacaaaaaacaaacaaaaaaaaccacttaatgcattta 52
Query: 421 gagctataaatgtccctaacaggactgcctttaaagtgagctagaaattta 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gagctataaatgtccctaacaggactgcctttaaagtgagctagaaattta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_i13.g1 MSMg01no372_i13.g1 CHROMAT_FILE:
MSMg01no372_i13.g1 PHD_FILE: MSMg01no372_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:18 2005
(540 letters)
>mm_chr2_41010505_41011443
Length = 939
Score = 1007 bits (521), Expect = 0.0
Identities = 537/545 (98%), Gaps = 6/545 (1%)
Strand = Plus / Plus
Query: 1 agtttacggcaccaacattaggcagctcacaactaactctctgtagatccagctcctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 agtttacggcaccaacattaggcagctcacaactaactctctgtagatccagctcctggg 255
Query: 61 tctccaatgcctctggcttccataggtcctagtactcatgtgcaaatacagacacacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tctccaatgcctctggcttccataggtcctagtactcatgtgcaaatacagacacacaga 315
Query: 121 aacatagctaaaaaataaatcctaaaaataagaaaagagcaccaatattattgattttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aacatagctaaaaaataaatcctaaaaataagaaaagagcaccaatattattgattttct 375
Query: 181 cactactgccttttaacagttttcaagacagggtaggtttctctgtgtagctctggctgc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 376 cactactgccttttaacagttttcaagacagggtaggtttctctgtgtagctctggttgc 435
Query: 241 ctaaaactagttctgtagaccagtctgaccttcaacttgaagattccccttgtcctggtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctaaaactagttctgtagaccagtctgaccttcaacttgaagattccccttgtcctggtc 495
Query: 301 tcgtgagtgttgagaccaaaggcatgcaccggcactacctggctgtgtggttttgttttg 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 496 tcgtgagtgttgagaccaaaggcatgcactggcactacctggctgtgtggttttgttttg 555
Query: 361 ttttgctatgctttgttttgtttt-----attttattttgttttaatgttttcttcctaa 415
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 556 ttttgctatgctttgttttgttttgttttattttattttgttttaatgttttcttcctaa 615
Query: 416 catccattttaaaggagtaaaattaaacatattatttggaaggaattgaaccataggttg 475
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 catccattttaa-ggagtaaaattaaacatattatttggaaggaattgaaccataggttg 674
Query: 476 ttcaattttattcataaagtttttgtaaactaagctagatgtagacatttatagacctaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttcaattttattcataaagtttttgtaaactaagctagatgtagacatttatagacctaa 734
Query: 536 gtaac 540
|||||
Sbjct: 735 gtaac 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 939
Length adjustment: 10
Effective length of query: 530
Effective length of database: 929
Effective search space: 492370
Effective search space used: 492370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
