BAC Information

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BAC

Clone NameMSMg01-372L21
Chromosome2 (Build37)
Map Location 122,000,577 - 122,001,020
singlet/doubletsinglet
Overlap gene4930424G05Rik, Trim69
Upstream geneD2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, B2m
Downstream gene4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372L21.T7 (MSMg01no372_l21.b1)MSMg01-372L21.TJ (MSMg01no372_l21.g1)
ACCAG478935AG478936
length788815
length of high quality
(start - end)		447 (38 - 484)363 (67 - 429)
definitionCHROMAT_FILE: MSMg01no372_l21.b1 PHD_FILE: MSMg01no372_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:33 2005CHROMAT_FILE: MSMg01no372_l21.g1 PHD_FILE: MSMg01no372_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
CAGCCTAACTGTCTGGCCTGCAGATCTTATAAGAACTACATTTTTCCCCA
ACCTCATCCCCAGTGCTGGGGCTACAGTTGTATGCCGCCATGCCTGGCTT
TTTACGTAGGCACTAAGGATCCAAACTCAGATCCTTGGGTTTGTTCAATG
CTAAGCCAACTCTCCAGCCCTCATCTATCTCTGTCTTGATCACAGAGATA
TTTACATGTTTGTCAAAACTCATCAGTTTGTGCACTGCATATATTTAGGT
AAAAGTGGCAGATTCTGCTATATTAATTATACTTCAGTGAAGTCAGTTTC
TTTCAGTGTTAGTCATCTGGAAAATGTATCAGGGATATATTTATGATTTT
AACTAGGTTAATAAGAAACAATAATATTAGATATATGACTTCTATAAAAG
CTATCTAAATTCTTATTTTTATATATATCTTATCTAGAATATTATTTCTT
TTTCCTGAAATAATACCACTTGTGGTAATCTTGTCCTGTTCAGTCCTCTG
ATATCTGCCAAAATTCCTACCCTTGATGTAGAAAAACAAGAAAAATTGTG
GGTAGGTCCCCCCCTTATTAAACTAACAAAATCTAGGCGAAGAGAAATTT
TATTACCAAAATTTTTTGTTTTATTAAGTTAAAAAAAATATTCTTTTTTC
CACCATACCGGCAAAAAAAAAAAAAATTTTTTTTTAATTTTACTCAGCTT
CCTTTCATTCCTCCTCCTAAAATTAAAAAATTTTTGCG

GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCTGAAATGCAGTGCTTAAAATTATAAATTCA
GCTGGGCAGTGATGGCACACGCCTTTAATCTCAGCACTCGGGAGGCAGAG
GCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCC
AGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAACAAAGAGAAA
GAAAAGAAAAATTTCAAATTCAGCTGGGTGTGGTGACAAGCATCTTCAGT
TGCAGTTCTTGGGAGGAAGAGGCAGGTGGATTGATGTGAGTTTAAGGCCA
GCCTAGACTATATAGCAGGTTCTAGGACAGCCAGGGATATATAAAGAGAC
CCTATGTAAAAACAAATTACAAATTCTTAGATAAAACATCGCTGCATTTT
ATTCATAAGCGCAGATTATCTTGTTCAACTACCCCTATCTGACCCTGTTT
ACTCCCCAATACCCGCTTTCTGTCCGAACTTTTATCCCCCCTCCGCTTTC
TTCGCTTTCTTTCCCCCTTTTCCCTCCTTTTTTTTCCCCACGCGCTTTAC
CACCCCTTTTCTCCCCATTTCTTTCTTTCCTATCCCTTCCTCCTTTCCTT
AACCTATTTTCCCTTTTCCCCTCTTTTTTCTCTTTTTTCCCCCTCCTTTT
TAAAATTTACCCTTCAAATTTCTCCTTCCCTTTTTTTTTCTCTTCTCTTA
CTTCCCCTTTCTTTTTTCCCCCCCCCCTCCTTATTTCTTCTTCTCCTCCT
CTCTCTTTTTCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_l21.b1 MSMg01no372_l21.b1 CHROMAT_FILE:
MSMg01no372_l21.b1 PHD_FILE: MSMg01no372_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:33 2005
         (447 letters)



>mm_chr2_122000194_122001040
          Length = 847

 Score =  851 bits (440), Expect = 0.0
 Identities = 443/444 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactcagcctaactgtctggcctgcagatcttataagaactacatttttcccca 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ggaattcactcagcccaactgtctggcctgcagatcttataagaactacatttttcccca 768

                                                                       
Query: 64  acctcatccccagtgctggggctacagttgtatgccgccatgcctggctttttacgtagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 acctcatccccagtgctggggctacagttgtatgccgccatgcctggctttttacgtagg 708

                                                                       
Query: 124 cactaaggatccaaactcagatccttgggtttgttcaatgctaagccaactctccagccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 cactaaggatccaaactcagatccttgggtttgttcaatgctaagccaactctccagccc 648

                                                                       
Query: 184 tcatctatctctgtcttgatcacagagatatttacatgtttgtcaaaactcatcagtttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tcatctatctctgtcttgatcacagagatatttacatgtttgtcaaaactcatcagtttg 588

                                                                       
Query: 244 tgcactgcatatatttaggtaaaagtggcagattctgctatattaattatacttcagtga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tgcactgcatatatttaggtaaaagtggcagattctgctatattaattatacttcagtga 528

                                                                       
Query: 304 agtcagtttctttcagtgttagtcatctggaaaatgtatcagggatatatttatgatttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agtcagtttctttcagtgttagtcatctggaaaatgtatcagggatatatttatgatttt 468

                                                                       
Query: 364 aactaggttaataagaaacaataatattagatatatgacttctataaaagctatctaaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aactaggttaataagaaacaataatattagatatatgacttctataaaagctatctaaat 408

                                   
Query: 424 tcttatttttatatatatcttatc 447
           ||||||||||||||||||||||||
Sbjct: 407 tcttatttttatatatatcttatc 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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