Query= MSMg01no372_m13.b1 MSMg01no372_m13.b1 CHROMAT_FILE:
MSMg01no372_m13.b1 PHD_FILE: MSMg01no372_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:36 2005
(243 letters)
>mm_chr2_92611901_92612543
Length = 643
Score = 455 bits (235), Expect = e-132
Identities = 241/243 (99%)
Strand = Plus / Minus
Query: 1 cctagtaagcacaagcagaaaattctggctcccccagatctgggaagtgcctcttagatc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cctagtaagcccaagcagaaaattctggctcccccagatctgggaagtgcctcttagatc 384
Query: 61 tctcttaaccaccatcaccaggctccggagcaccagtttgtcccagatggagtcactcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctcttaaccaccatcaccaggctccggagcaccagtttgtcccagatggagtcactcaa 324
Query: 121 cagacagaccacactgggaagcatcaggaacgaggtgggcacagcaataaagcactcgtt 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 323 cagacagaccacactgggaagcatcaggaacgaggtgggcacatcaataaagcactcgtt 264
Query: 181 ataattcccgatgcaatggtggggagagtcagaacgtgggactctgcttgatttgtctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ataattcccgatgcaatggtggggagagtcagaacgtgggactctgcttgatttgtctat 204
Query: 241 ctg 243
|||
Sbjct: 203 ctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no372_m13.g1 MSMg01no372_m13.g1 CHROMAT_FILE:
MSMg01no372_m13.g1 PHD_FILE: MSMg01no372_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:36 2005
(517 letters)
>mm_chr2_92475036_92475952
Length = 917
Score = 920 bits (476), Expect = 0.0
Identities = 511/532 (96%), Gaps = 15/532 (2%)
Strand = Plus / Plus
Query: 1 cttcctcatcttctgtctccagctcccaagtgccaggatttcgggtgggcctcatcaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cttcctcatcttctgtctccagctcccaagtgccaggatttcgggtgggcctcatcaagc 245
Query: 61 tcagctccgagttttgcattcccatgaagcctatgtgtccttatgcccacattctttaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tcagctccgagttttgcattcccatgaagcctatgtgtccttatgcccacattctttaat 305
Query: 121 ctctctaactagcagggtgatgagagtctgattctagcccctgccaccccccccccccgc 180
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 306 ttctctaactagcagggtgatgagagtctgattctagcccctgtcaccccccccccccgc 365
Query: 181 cctcgggttgcgtttctaaagatagaaccagccaggtct---------------gtggtt 225
||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 366 cctcgggtttcgtttctaaagatagaaccagccaggtctacatgcctgtagtctgtggtt 425
Query: 226 tgtaatccctgtgtctaccatgtcccatcagtgcaggcccagaagcttccaatcatcttc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgtaatccctgtgtctaccatgtcccatcagtgcaggcccagaagcttccaatcatcttc 485
Query: 286 cctccattcttcccacccagcttcataatttttgtatggatctgagctctgtatctggaa 345
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cctccattcttttcacccagcctcataatttttgtatggatctgagctctgtatctggaa 545
Query: 346 gggaatctccagtaaaggtatatagaacatgtgcttcttctgactacatacatgcacgcc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gggaatctccagtaaaggtatatagaacatgtgcttcttctgactacatacatgcacgcc 605
Query: 406 ctctactcatgtactacattgtgagctctcccaattctaggtagggtgttaggaaattgt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctctactcatgtactacattgtgagctctcccaattctaggtagggtgttaggaaattgt 665
Query: 466 cattttaagaaagggactgggaatagctcgggtgggagggtgcttgccacag 517
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cattttaagaaagggactgggaatagctcgggtgggagggtgcttgccacag 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
