BAC Information

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BAC

Clone NameMSMg01-373A10
Chromosome2 (Build37)
Map Location 88,868,749 - 88,869,195
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217
Downstream geneOlfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373A10.T7 (MSMg01no373_a10.b1)MSMg01-373A10.TJ (MSMg01no373_a10.g1)
ACCAG479152AG479153
length7061,634
length of high quality
(start - end)		563 (13 - 575)---
definitionCHROMAT_FILE: MSMg01no373_a10.b1 PHD_FILE: MSMg01no373_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:54 2005CHROMAT_FILE: MSMg01no373_a10.g1 PHD_FILE: MSMg01no373_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCTATATTCAGAGGATCCGCGGAATTCATCATTCTATACTACCTTCTAG
AAAATAGTATATATTTATAATATCTATGTATCATGACTTAAAAGTTTTTC
TTATTTTCATAGTTATAAAACTTTTTAAAAAGTATCACTTTTGATATCAT
ATAGAGTGTTATTTATAGAATCATGTGATAGTAACTAATAATGGTTTTAT
TTAACTATATTAGCTATTATGAATTTTTTACATTGTTCTCATTTTTCAGT
TTTTAGATACCATTCTATAAATGTCATTGAGTTAGTTCTGTTGACCATCT
ACAATTGGACTTGGGGCCTATAAATGTGGTTTATGTACCCAGTGAGACTT
CATCAGAAAAAAACTATTTTATTTATTTATTTTTTAAATTTTTGTTCTCA
TATATTACATCCTTACTGCAGTATCTACTTCCTGCCCTCCCCTTCCCCTC
TTACTTCCACCTTCCCTTTCCTCCAGATCCACCCCACAGACAAGTGCAGG
CCTCCCAGGGACTTCAACCAAACAAGTAAATCAAGCTACACTAAGACAAG
CACATAAAATTACATCCCCATTGGATGAGCCAACCCCCTGGGAGGACTAG
AATTCTACAAGCATTCAAAAGAGTAAGAAGCAACTCCTGCTCCCANTGNT
ANGNATTACACAAGAACACCAGGGTTTTCAACATAACAAGTATGCAAACA
TCTTAA

TCGTGATTATTTGCTGTCGTATCTGTGTGGNGCNTAGTGTGACATACATC
TCTCTNTCNTACACTATCTCNCTATATCAGCCCAATCATGCTAATATTTG
CTCNTCATATCGGCCATAGTTGCGACGGCGAGAGCAGCACCNCACAGACA
TCACATCTCAGCACCACAGCTAGGCACCAGCAGAGACCCGTGCAAGCTCA
TAAGTATCGCTACACACATTGAGGAGCTAATACAATCGATCAGGGGTACA
TACGATACTGATACTCCGATACACACATATCCATATGCAACAGATAGTAC
ACATNACTTCACATCACGCACGTCCATCGTCGGAGGCGAGAGCGCGCGCA
GCCACCGCTGTGTCGCCTCGATAATTGACTATCTAGGCAGTGCTAGACAC
TCATGCACTCACGTGTCATGCTCGCCAGTGACATTGCGACGGACAACTTC
TTATGCGATTACTATCGATCCCTGTCGCTACACGCCAATACCACTAGCAT
CGACATCTACTCATCTCGGCACACTGCACGCGACGTAGCACTGCGATGCC
CGATGCTCTGTCATCTAGACGCGCGCCGGTGATTCAGAATCAGCGGTTTG
GCGAGTGAGACGACATCCAACCGCAGCAGTATGCGTGACTGACGAGCATG
TGCGTAGCATCAGTAACGTGACACTCAGCTGTACGTAATGAGATGTCTAT
CCTGGCTATGCTGGACGCTGCATCGCATACGCAATCTATGATATCGGACT
TAGCATCCTCAACATTCATACAGACTACAGTCTATCTACGCTTGTACGTC
GTCGATGTCCTAGCNACATATCTTAGATCAATTTTCATGCGTACAATGCA
GATACGTCGATTCTATACATCGGTAGTAGGACCAGACACACTCCCTCACA
TATACGCCGCGGTNTAATACAATATCATACTGTCCCGAGTACGCTGATCT
CTGCACCGCACCGTCGACGGCACAATCTACGACACACTATCAGTGCGAGT
GACACAGGACCTACGACTAAACCCAGCAGACCGAGTGCTCACGACCGAAT
GACAATAGAATATCATATATATACTCGTCCGCACACTGCTACCTCGTACG
CTCCTATATCGGACGCGCGTGCCGCGTAGCGTTACGTCCGCGATCTGGCG
CCGTACACACCGACTACGCANCGAGATAGTGACCCAATAACTAGTCACAC
ACAGGTCATCACCACGCGCGCGCGGACCAGNTACGCGCGACACCCGCCTC
ATGTGAACATGTAGCGCGTCTCTGACGCACACTCTCCTTACTGCGCTCGA
GTATCGCATGCTACTTCTACATGACATCACTCTCTCTGTCACATCTTNGT
CTAGCGCCTANTCGGCGCCACAACCATACCTAGCATGAACAGCACACTAT
ACGCATATACACGACACACAGTCTCATATCTCAGACTCTATCACTTACAN
AGTATCAGATGACATACACGCGCTCAATATATATCGACGATCCAAGACNA
TATATGGACGCATCGACGANTCCAGTATACTCATATGTGAGANGAACACA
CGACGNACGAAANTCAAAAGAGGACGCAGTAGCGCNCGAGCGAAANTAGT
ATATAGGAGCGTATACTGACAGATATCAACACGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_a10.b1 MSMg01no373_a10.b1 CHROMAT_FILE:
MSMg01no373_a10.b1 PHD_FILE: MSMg01no373_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:54 2005
         (563 letters)



>mm_chr2_88868748_88869707
          Length = 960

 Score =  832 bits (430), Expect = 0.0
 Identities = 444/450 (98%), Gaps = 3/450 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  ggaattcatcattctatactaccttctagaaaatagtatatatttataatatctatgtat 69
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggaattcatcattctaaactaccttctagaaaatagtatatatttataatatctatgtat 389

                                                                       
Query: 70  catgacttaaaagtttttcttattttcatagttataaaactttttaaaaagtatcacttt 129
           ||||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 388 catgacttaaaagttt---ttattttcgtagttataaaactttttaaaaagtatcacttt 332

                                                                       
Query: 130 tgatatcatatagagtgttatttatagaatcatgtgatagtaactaataatggttttatt 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgatatcatatagagtgttatttatagaatcatgtgatagtaactaataatggttttatt 272

                                                                       
Query: 190 taactatattagctattatgaattttttacattgttctcatttttcagtttttagatacc 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 taactatattagctattatgaattttttacattgttctcatttttcagtttttagatacc 212

                                                                       
Query: 250 attctataaatgtcattgagttagttctgttgaccatctacaattggacttggggcctat 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 attctataaatgtcattgagttagttctgttgaccatctacaattggacttggggcctat 152

                                                                       
Query: 310 aaatgtggtttatgtacccagtgagacttcatcagaaaaaaactattttatttatttatt 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 aaatgtggtttatgtacccagtgagacttcatcagaaaaaaactattttatttatttatt 92

                                                                       
Query: 370 ttttaaatttttgttctcatatattacatccttactgcagtatctacttcctgccctccc 429
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  ttttaaatttttgttttcatatattacatccttactgcagtatctacttcctgccctccc 32

                                         
Query: 430 cttcccctcttacttccaccttccctttcc 459
           ||||||||||||||||||||||||||||||
Sbjct: 31  cttcccctcttacttccaccttccctttcc 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 960
Length adjustment: 10
Effective length of query: 553
Effective length of database: 950
Effective search space:   525350
Effective search space used:   525350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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