ACTCCTATAGTCAGAGGATCCGCGGAATTCTTCAAGTTTCTATAAATCTT
TTAGGCACCATTTGTAGCATATAAGCCCAAGCTATAAAACACCCTTCTCC
CTGTTCCTAGAATTCTTCCAACTGGTTTAGGCCGAAAGTGCAGAACCCTG
GGACCAGACCTAAAGTGACCTAGGTATAAGCAGACAACGTTTGTGACAAC
TAAGAACTGGTGGAAGGAAAGCCTTTGTCTCTACAGATTCATATGGTCAG
GCCATACTGCTAATGTAGTATGTCTACGAGTAACTTCTTTTCTTTGTCTT
GTCTTTCCTTTCCCTTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTCT
TCCTCTTCCTCTTCCTCTCCTCCTCCTCCTCCTCTTCCTCCTCTCTGTGT
AGGCTGTCCTAGAACTCACTCTGTAGAACAGGCTGGTACAAGTAACTTCT
AAGCTCTTAAGTTGGATGTTCACTCTGTCATCTAAAGCAAGCTGAGATTT
TAATTCCGGCCGAAAAGTGGGCCAGTTGGCCTTAAGAAAAAACGGCCCGC
CTTGGGGGCTTCCCATGCGGGTTTCCTTGATAAAAAGGGGGGCCAAGCCC
GACCATGGTTCTCAAGAAACTGGTCATCTTGCTTGGGAAAAAAAACAACT
CAGGCCCTGCTGATAATTGGAATTGTCCCAAAAATTTATTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTCTATATACTGGAAGGGTGACCTAAGCCAATAAAAATGTAAA
AATCTGATGCAGACCAAACAGTGGCAGCTGTGGTTGCCTATATATGACCT
GTCCAAGATCAAGCTGCTTCAAAAGTCCAGCATGGAAAGGAGGAGGGCTC
CACAGGTCCCACCACTAGCTGAGGAGTTGCAGGCAATTGATGGTTATAAG
GGAGGAAGGGTCACTTTTCTTTAGGAGGATGGACACTTGATAAGATTACA
CAGGTTCGCCGGGCAATGGTGGCACGTATATACACGCCTTTAATCCCAGC
ACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTC
TACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTC
ANAAAAAAAAAAAAAAAAAAAAGATCCCACAGGTTCCAGTGGATGACCCC
ACATCCAGGCACAGAAAAGTAGCACCAAGTGGCCTTAGAGAGATGTAAAG
GAATCACCTGGGTGGTGGGTGGTGGTACCTGCCCTTAATCTCAAGCAGAA
TAAACCCCGGGATCCCAACCCCGCCGGGTTTATAAATTCCCGGAAATCCA
AACCTATGCGAAAAAACCTTTTCTAAACCCCTTTTTACTTCTCCCCCCCC
CTCTAAAGAAAAAAATAAAGACAGTGGGGTTCTCTTTA

Query= MSMg01no373_e21.b1 MSMg01no373_e21.b1 CHROMAT_FILE:
MSMg01no373_e21.b1 PHD_FILE: MSMg01no373_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:14 2005
         (409 letters)



>mm_chr2_28813646_28814454
          Length = 809

 Score =  663 bits (343), Expect = 0.0
 Identities = 399/443 (90%), Gaps = 43/443 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaatcttttaggcaccatttgtagcatataagcccaagctataaaacacccttctccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaatcttttaggcaccatttgtagcatataagcccaagctataaaacacccttctccct 260

                                                                       
Query: 61  gttcctagaattcttccaactggtttaggccgaaagtgcagaaccctgggaccagaccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcctagaattcttccaactggtttaggccgaaagtgcagaaccctgggaccagaccta 320

                                                                       
Query: 121 aagtgacctaggtataagcagacaacgtttgtgacaactaagaactggtggaaggaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgacctaggtataagcagacaacgtttgtgacaactaagaactggtggaaggaaagc 380

                                                                       
Query: 181 ctttgtctctacagattcatatggtcaggccatactgctaatgtagtatgtctacgagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgtctctacagattcatatggtcaggccatactgctaatgtagtatgtctacgagta 440

                                                                       
Query: 241 acttcttttctttgtcttgtctt--------------------------tcc-tttccct 273
           |||||||||||||||||||||||                          ||| |||||||
Sbjct: 441 acttcttttctttgtcttgtcttgtcttgtcttgtcttgtcttgtcttttccctttccct 500

                                                                       
Query: 274 ttccctttc--------------tttctttctttctttctttctttctttctttctttct 319
           |||||||||              |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccctttccctttccctttccctttctttctttctttctttctttctttctttctttct 560

                                                                       
Query: 320 ttctttctttctttctttctttctttctttccttcctcttcctcttcctcttcctct-cc 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ttctttctttctttctttctttctttctttccttcctcttcctcttcctcttcctcttcc 620

                                  
Query: 379 tcctcctcctcctcttcctcctc 401
           || ||||||||||| ||||||||
Sbjct: 621 tc-tcctcctcctcctcctcctc 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)