ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACGAGGATCC
GCGGAATTCAGTCTCTCTAACTCAATACCAAATGTATTATTTTCGTGTTA
AAGCTTAACTGCCAGTTTTTGTATATGAATGTACAATGGTGCAGCTTTTA
ATACCTCATTAAAGAAACATTGTTTGAAATCCTATCTTTTATAAGTCTGG
TTTCTAGGACAGGAACTACATAAAATAATATCCCAATTCAGAGGTATCTC
TAGAGACTTATTTCCCTGGGTTGGCTCATGCCACGGGTTGTTGCCCAGAA
TAACTCCAACCTGAGTTACCAGTTTTAAGCCTACTTTATGTTACTGATGT
TACACATTTTTTAACCATAACAAAAAACTTGTAAGACAATAATCTATAAT
GAAGATGTGGAAAACATATTTCAATCCTTAAGACCAGTCAGAAATTAACA
TGAAGTGACTATACATATTTACTTATTTAGACTATAGACACAATTTTTTT
TTTTACTATTTCTAGCTGTAACTTAAGGGAAGAACACCTTGTCACCTGCT
GAACCCAATAATTATTCACAGACATTTTTGTTGGAGAAACAGCCATCAGC
TTCCCGTTCTGTAGAAGCTGAAATGCTTGCTGGCTCCTTTAATAGCGGCC
TTGTACAGACCTATCACCCCCCTTGCCATGACTTTTCCAACATTTCTTAA
AATCCTAACATTATATTTTGCAGGGTCTCCCATTGTGCTATTTTATCATN
CTCTCTTCCTCGCGACACACTTTTATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAATAGATTGGAATGATCTATTGGGGGTATATTTATAACTAGAGA
AAAGTAAAATATCATTTTATTTATTTGAAGAAACAAAACTATCAGTTGTC
AGTCATGGTGTACAAATATATTTTTAAAACAAAATTTCTCTTTAGAAAAA
AGATTTATTTGGTTTCTTTTAGGGGCAGATGAAATTTAATTAGAACAATT
AGTAAAAGGCTGAAATTCATCTTTAATTTAATGTCAACTTTTCTACACAA
GTACAGATTGAAAGTTATATTGCCATCATGTTTTCTGAACAGAGCATTAT
ACATACATTACTAATGACATATACTTACCTGCGTGGAAGTCTATCCCCAC
AGCAAAAGCAGCTCCTGATATTGGCATCAGGGCATCCACCTTGTCACGTG
GCTCAAGAGGGATCCCCCGGATTCCTTCATGAACAGAGTACATAAGAAAA
GATTCTATACCTAAATGGAGGAAAGAGAACTTANNATGAATACTTCACAT
AACAATACATTCATATCATCTCTATAATATTAATTTATATTTTGTGAATG
TTTCTTAGCTTCATATACATAGTTGTATAGATCCCAGGATTGAAAGATAT
GTAAACCAAGGGCCTGAAAATCCTGTGTGCATTGTATTCTCTCAAAGGGG
TTCCATAGCTTACAAGGTCCCCAGGACCCCAAAAAAGGGAAAAATAAAAG

Query= MSMg01no374_c05.g1 MSMg01no374_c05.g1 CHROMAT_FILE:
MSMg01no374_c05.g1 PHD_FILE: MSMg01no374_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:16 2005
         (534 letters)



>mm_chr2_41040867_41041801
          Length = 935

 Score =  971 bits (502), Expect = 0.0
 Identities = 524/532 (98%), Gaps = 1/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   agattggaatgatctattgggggtatatttataactagagaaaagtaaaatatcatttta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 agattggaatgatctattgggggtatatttataactagagaaaagtaaaatatcatttta 263

                                                                       
Query: 64  tttatttgaagaaacaaaactatcagttgtcagtcatggtgtacaaatatatttttaaaa 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 tttatttgaagaaacaaaactatcagttgtcagtcatggtgtacaaatatatttttaaga 323

                                                                       
Query: 124 caaaatttctctttagaaaaaagatttatttggtttcttttaggg-gcagatgaaattta 182
           ||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 324 caaaaattctctttagaaaaaagatttatttgttttcttttagggagcagatgaaattta 383

                                                                       
Query: 183 attagaacaattagtaaaaggctgaaattcatctttaatttaatgtcaacttttctacac 242
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 attagaacaattagtaaaaggctgaaattcatctttaatttaatgtcaacatttctacac 443

                                                                       
Query: 243 aagtacagattgaaagttatattgccatcatgttttctgaacagagcattatacatacat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagtacagattgaaagttatattgccatcatgttttctgaacagagcattatacatacat 503

                                                                       
Query: 303 tactaatgacatatacttacctgcgtggaagtctatccccacagcaaaagcagctcctga 362
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 504 tactaatgacatatacttacctgcatggaagtctatccccacagcaaaagcagctcctga 563

                                                                       
Query: 363 tattggcatcagggcatccaccttgtcacgtggctcaagagggatcccccggattccttc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tattggcatcagggcatccaccttgtcacgtggctcaagagggatcccccggattccttc 623

                                                                       
Query: 423 atgaacagagtacataagaaaagattctatacctaaatggaggaaagagaacttannatg 482
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 624 atgaacagagtacataagaaaagattctatacctaaatggaggaaagagaacttaaaatg 683

                                                               
Query: 483 aatacttcacataacaatacattcatatcatctctataatattaatttatat 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatacttcacataacaatacattcatatcatctctataatattaatttatat 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space:   484700
Effective search space used:   484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)