BAC Information

Click to search

BAC

Clone NameMSMg01-374D14
Chromosome2 (Build37)
Map Location 174,407,812 - 174,593,536
singlet/doubletdoublet
Overlap geneLOC664967, LOC100043757, Edn3
Upstream geneLOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2
Downstream geneLOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374D14.T7 (MSMg01no374_d14.b1)MSMg01-374D14.TJ (MSMg01no374_d14.g1)
ACCAG480070AG480071
length800758
length of high quality
(start - end)		348 (47 - 394)478 (56 - 533)
definitionCHROMAT_FILE: MSMg01no374_d14.b1 PHD_FILE: MSMg01no374_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:24 2005CHROMAT_FILE: MSMg01no374_d14.g1 PHD_FILE: MSMg01no374_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,407,812 - 174,408,156)(174,593,059 - 174,593,536)
sequence
GCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGTCATTCGGCTTCACTTGGTGGTTCAAGCTTTCAGGAACAT
CAATGCTGACAGAAAGTCAATGGGTGACTTGTGTGGAGGGAGACTTGTGA
AGTCAGGTCAGTCTGTAGTGTCCAACCTCAAGCTTTTGGGAGCATGTGGG
GACAGCCAGTGGCACAGGATAGACAGAGAACTCACTAGGACCCACTTGTG
TTACTCAAGTTAGTCTCTGTGGTGGTTTGATGGAATATGAGCCATAGGCT
CATATATTTGAATGCTTAGTCCCTAGTTGGTAGAGTTGTTGGGAAAGGAT
TAGAAGATGTGATCTTATTGGAGGAGGTGTGTTGTTACTAGGGATGGNCT
TTGACTTATGGTTTTACTGCTGTGACTATACTCCTTGACCATGTGTTCTC
TTATAATAACGACATTTATTTGGCTCTGGCTTACAGGTTCATAGATACTT
TCCACGATCTTCAAGGTGGCTCTAGCCCTATCTCCTTATGCTTGTTGCTT
TTTGACTTGACAGTTCTACATCCTCTTCTGTAATGCTCTATCTTATTAAT
GACTTTCCCCGCCCCCCATTTGACTTGTCTTATTAAATATTTTTTCCCTA
TACTCTCCTATCTCTCAAATATTCCATGTCTTTCTTATCATCTCTCACCC
CCCTTTTTCTATCTTTCTTCATCTTCTTCTCCTTCTTTCTTCATGATTCC
TCCTTCGCCTCAACGCCCCATTTTTTATTCCCTCTGCATTCCTATTTTGN


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGTAGTCACTGATGTCCAAGCATGGGATGGAAAATAGCAAGACAG
TCAGTCACTCTGTGGAGATAGGTTTCTGCAGGCATAGAGGCTGTCCTGGA
TTGTGATGGCTATGTTTCTATGTATTCTAGACCTGGCTGGTGACTACTCC
TAAGTATTATGCTGACCAGTCTACAGATATTTCCCCCAGTTACCTTCACA
GACTCTTCACTCCCCTAACAGGCATACAGGGAACTGAGACCCACAGAGAG
ATGTCTTCTAAGTGTAATCTCTAATAAGATGATATGAGTTTAAGCTCTTC
AATGACACATGGCTCTTCTTCCCCTGGTTGTGAAAATTCACATGAGGAAG
TTCTAGGGTCCCCCCCTCTCTAAATGCCATGAGTCTTGGACCCAAGGTGT
GTGAGACTCTGGACAGCAAGGGATAATGGGTTTAAGCAAATCCATCTCTC
TTTGTGATCGCACCAGGTGGTGAAAGGCTGGTCAGGGCATGGACTTACGA
ATGATAGAGCATGAAACAACAGTCAGAAAAAGAATACTCCCCCTCAGGAT
GGAGTCATGGGGTTGTGGTATCCTCCTACCCCTCCCTGTCTATTCCTGCT
TCCCTGGCCTTCAGTTTAAATCTGCCAGTGTTTCTCGGTTCTTTTTTTAC
CCGTANCCATGGTTCCCCCTACCGCTCTCACATGTTAATATTCCTTCTCT
CCCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_d14.b1 MSMg01no374_d14.b1 CHROMAT_FILE:
MSMg01no374_d14.b1 PHD_FILE: MSMg01no374_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:24 2005
         (348 letters)



>mm_chr2_174407609_174408356
          Length = 748

 Score =  652 bits (337), Expect = 0.0
 Identities = 343/345 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggtcattcggcttcacttggtggttcaagctttcaggaacatcaatgctga 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggtcattcggtttcacttggtggttcaagctttcaggaacatcaatgctga 263

                                                                       
Query: 64  cagaaagtcaatgggtgacttgtgtggagggagacttgtgaagtcaggtcagtctgtagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagaaagtcaatgggtgacttgtgtggagggagacttgtgaagtcaggtcagtctgtagt 323

                                                                       
Query: 124 gtccaacctcaagcttttgggagcatgtggggacagccagtggcacaggatagacagaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtccaacctcaagcttttgggagcatgtggggacagccagtggcacaggatagacagaga 383

                                                                       
Query: 184 actcactaggacccacttgtgttactcaagttagtctctgtggtggtttgatggaatatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actcactaggacccacttgtgttactcaagttagtctctgtggtggtttgatggaatatg 443

                                                                       
Query: 244 agccataggctcatatatttgaatgcttagtccctagttggtagagttgttgggaaagga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agccataggctcatatatttgaatgcttagtccctagttggtagagttgttgggaaagga 503

                                                        
Query: 304 ttagaagatgtgatcttattggaggaggtgtgttgttactaggga 348
           ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttagaagctgtgatcttattggaggaggtgtgttgttactaggga 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_d14.g1 MSMg01no374_d14.g1 CHROMAT_FILE:
MSMg01no374_d14.g1 PHD_FILE: MSMg01no374_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:24 2005
         (478 letters)



>mm_chr2_174592859_174593736
          Length = 878

 Score =  847 bits (438), Expect = 0.0
 Identities = 468/478 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagtcactgatgtccaagcatgggatggaaaatagcaagacagtcagtcactctgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgtagtcactgatgtccaagcatgggatggaaaatagcaagacagtcagtcactctgtgg 619

                                                                       
Query: 61  agataggtttctgcaggcatagaggctgtcctggattgtgatggctatgtttctatgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 618 agataggtttctgcaggcatagaggctgtcctggattgtgatggccatgtttctatgtat 559

                                                                       
Query: 121 tctagacctggctggtgactactcctaagtattatgctgaccagtctacagatatttccc 180
           |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 558 tctagacctggctggtgactactcctaagtattatgttgaccagtccacagatatttccc 499

                                                                       
Query: 181 ccagttaccttcacagactcttcactcccctaacaggcatacagggaactgagacccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccagttaccttcacagactcttcactcccctaacaggcatacagggaactgagacccaca 439

                                                                       
Query: 241 gagagatgtcttctaagtgtaatctctaataagatgatatgagtttaagctcttcaatga 300
           |||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 438 gagagacgtcttcaaagtgtaatctctactaagatgatatgagtttaagctcttcaatga 379

                                                                       
Query: 301 cacatggctcttcttcccctggttgtgaaaattcacatgaggaagttctagggtcccccc 360
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| 
Sbjct: 378 cacatggctcttcttcccctggctgtgaaaattcacatgaggaagttctggggtccccct 319

                                                                       
Query: 361 ctctctaaatgccatgagtcttggacccaaggtgtgtgagactctggacagcaagggata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctctctaaatgccatgagtcttggacccaaggtgtgtgagactctggacagcaagggata 259

                                                                     
Query: 421 atgggtttaagcaaatccatctctctttgtgatcgcaccaggtggtgaaaggctggtc 478
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 258 atgggtttaagcaaatccatctctctttgtgatcgcaccaggtggtaaaaggctggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |