BAC Information

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BAC

Clone NameMSMg01-375C21
Chromosome2 (Build37)
Map Location 155,435,185 - 155,435,579
singlet/doubletsinglet
Overlap geneMyh7b
Upstream geneZfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss
Downstream geneTrpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375C21.T7 (MSMg01no375_c21.b1)MSMg01-375C21.TJ (MSMg01no375_c21.g1)
ACCAG480797AG480798
length789783
length of high quality
(start - end)		436 (50 - 485)396 (79 - 474)
definitionCHROMAT_FILE: MSMg01no375_c21.b1 PHD_FILE: MSMg01no375_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:41 2005CHROMAT_FILE: MSMg01no375_c21.g1 PHD_FILE: MSMg01no375_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTCTATAGACTAGGCTGGCCTCATACTCACAGAAACCCAC
CTGACTCAGCCTCCTAAATGCTGGAATTAAAGGTGTGCATCACTCCTGCC
TGGCCTGAAACACTGGACTTCTTAGTGATTTTGTGCATTAAAAAAACACT
ATCAAGCTGGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGG
CAGAGGCAGGCAGATTTCTGAATTCGAGGCCAGCCTGGTCTACAGAGTGA
GTTCCAGGACAGCCTGGGCTATACAGAGAAACCCTGTCTTGAAAAAAACA
AACAAACAAACAAACAAAAACCAAACCAAACCCAACCCAACCAACCAACC
AACTAAATAAACAAACAAACCTAACACACTATCAAATGACTACATACCAT
ATCACATTAGGGTGGTCATTATAAAAGTAGAATACAGCAAATGTTGACAA
TGATATGGGGGGAAATTGGGGACCCCCTGTGCACTAATGATGGGAATACA
CCAAAAGTACAACTACTAATAGAACTATATGGTGAGGAATTAAAAAAGAA
AAGTTATATAATTGACGGGAGCCAACTTCTTAGAAAGGCTTTATCCATGC
GAATTTCCTGGAAAGGGCCCCCCATTTTCTTGGGTTGGGAAAGAACTTCT
AAGAAGGAAAACCCCAAAAATTTCCCCCCAAAATAGTTCTCCCGGGGGAA
AGGAGTGCCTTTCTCCAAATAAGGGGGAATCTCGGCCTN

NNNNGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTACCAACAGGAATCCATT
CCAGATACGTATCTGTACCAAACAAAATATACAAGGGTAATTTTATACAT
TATCACCACATATGCTTGCGGAGCAGGCAAAACTAGGCATGGGGACAGAA
GTGTAAGGCTGGTCTGCTGAGAATGGAGGGCGTAAGAGAACCATCTAGAA
TGTAAGAAATATTCCAGGCACAGGAATGGTCACATAGTTGTGTCTACCTG
TGAATCAAACCAAGCTGTATGTTTTAAATGTATGTACACACACATGTAAT
GAAACAGACACATACAACATGAAAGCCCCCCTCCTCCCAGAAAAACATGC
AAGTTTTAAAAACAAGTTTGGTAATGCCTGACATAAGTAGAAACCTTTCC
CGGGAGGAATTGTCTCCGCTCGGNTTTGTCTACAGTTGAAATCTTTATGC
CTGAGATCTTACATCCTCCTTGACGTGTTTGTGGGAACAGACAAATTTTC
TTCTCTGTGGAAGGGGGTTGGTTCCCCATTTGCCCCCGCCCTACAGAAAA
ATCCCTAGAAAGGGGTTGGTACTTGTCTCCAACCCCCTCCCAAAAGCTGC
TTCCGTAAAGACATCTACAACACCCTTCCTCCTTTAGGGCCCACTCTTTC
AATTTCTGGCCAAAATTTCCTCCTTTTTCTAAATTTCACACCTTCATCTA
CATCAAATCTTATCTTCCTTCATCTTTTATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_c21.g1 MSMg01no375_c21.g1 CHROMAT_FILE:
MSMg01no375_c21.g1 PHD_FILE: MSMg01no375_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:41 2005
         (396 letters)



>mm_chr2_155434985_155435780
          Length = 796

 Score =  764 bits (395), Expect = 0.0
 Identities = 395/395 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtaccaacaggaatccattccagatacgtatctgtaccaaacaaaatatacaagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tctgtaccaacaggaatccattccagatacgtatctgtaccaaacaaaatatacaagggt 536

                                                                       
Query: 61  aattttatacattatcaccacatatgcttgcggagcaggcaaaactaggcatggggacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aattttatacattatcaccacatatgcttgcggagcaggcaaaactaggcatggggacag 476

                                                                       
Query: 121 aagtgtaaggctggtctgctgagaatggagggcgtaagagaaccatctagaatgtaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aagtgtaaggctggtctgctgagaatggagggcgtaagagaaccatctagaatgtaagaa 416

                                                                       
Query: 181 atattccaggcacaggaatggtcacatagttgtgtctacctgtgaatcaaaccaagctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atattccaggcacaggaatggtcacatagttgtgtctacctgtgaatcaaaccaagctgt 356

                                                                       
Query: 241 atgttttaaatgtatgtacacacacatgtaatgaaacagacacatacaacatgaaagccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atgttttaaatgtatgtacacacacatgtaatgaaacagacacatacaacatgaaagccc 296

                                                                       
Query: 301 ccctcctcccagaaaaacatgcaagttttaaaaacaagtttggtaatgcctgacataagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ccctcctcccagaaaaacatgcaagttttaaaaacaagtttggtaatgcctgacataagt 236

                                              
Query: 361 agaaacctttcccgggaggaattgtctccgctcgg 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 agaaacctttcccgggaggaattgtctccgctcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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