BAC Information

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BAC

Clone NameMSMg01-375P13
Chromosome2 (Build37)
Map Location 88,599,393 - 88,599,940
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199
Downstream geneOlfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375P13.T7 (MSMg01no375_p13.b1)MSMg01-375P13.TJ (MSMg01no375_p13.g1)
ACCAG481399AG481400
length756757
length of high quality
(start - end)		524 (73 - 596)548 (76 - 623)
definitionCHROMAT_FILE: MSMg01no375_p13.b1 PHD_FILE: MSMg01no375_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:44 2005CHROMAT_FILE: MSMg01no375_p13.g1 PHD_FILE: MSMg01no375_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGTGGAAAACCGAATGGCTGAGAAACACCTGAAAAA
ATGTTCAGCATCCTTAACTATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCATCTCACACCAGACAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAGGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTACAAGCACTCTGGAAATCAGTCTGGCGGTTCC
TTAGAAAATTGGACATAGTACTACTAGAGGATCCTGCAATACCTCTCCTG
GGAATATACCCAGAAGATGTTCCAAATGGTAAGAAGGACACATGGTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAACTGGAAAGAACCCA
GATGCCCCTCAACAAAGGAATGGATACAGAAAATGTGGTACATTTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGG
CAAATGGATGGACCTGGAGGGCATTATCCTGAGTGAGGTAACACAATCAC
AAAAGAACTCAAATGATATGTACTCACTAATAAGTGGATATTAGCCCAGA
AACTTAGAATACCCAAGATATAAGTTAAAATTTGCAAACACTTGAAACTG
AAGAAGATCGAAGACCAAGTGTGGACACCTTGCTCCTTCTTAAAAATGGG
AACAAA

NCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTATAAGAAATTAGTATGGAGTGT
CAGAACATACTTCTACTGCTTTGAGTAAAATGTTTTTTACTTAATAACAC
TCGGTAAAACTGATGACAATTTATATAGAGATATTAAATGATGATTGGCC
TTTTTCTTTAAAGAGTTAATGACAGTATGTTGTGGAAGAAAATTCTAATG
CATAATTTGTTTCTATCAATAAAGTTATCAATAAATTTATTAGCATATAC
AATATGTGCTGATAAAGTGAATTTTGTATATAAAAGGGCATCAATAGTAT
ATGGGAAGAAATGGGTGAATCTGATATACTATTATTTGTTATTATTTCAT
AAGGTATTAAACTATGAAAACATTCCCCATATATTTTCATGTAAAGTGGT
CAAATGAGATTAGGCTGAGCAAAAACTATCTATGTACACCCAAAATTTAA
AATACATTATGCATAACTAAAATTTAGAGGAAAGGATATTAGGGAATAAT
AGTGTTGACAAAACTTCTCAGAAGTATCTGCTTTGTGATGAGCAAGTGCA
GTACTTGTGGAATTGTGTATACTACAGTATAAGATGATTATTTTCCACAT
GTTTCTGAAATTGAATCCCAAAGCTTTCCCATTTGGTGGGCATATACCCA
AATGGACTTTAAAAACTTGACTAACCTCTTTTCTAAAAAAGTTCCCCACC
ATCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_p13.g1 MSMg01no375_p13.g1 CHROMAT_FILE:
MSMg01no375_p13.g1 PHD_FILE: MSMg01no375_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:44 2005
         (548 letters)



>mm_chr2_88599193_88600140
          Length = 948

 Score = 1029 bits (532), Expect = 0.0
 Identities = 544/548 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttataagaaattagtatggagtgtcagaacatacttctactgctttgagtaaaatgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cttataagaaattagtatggagtgtcagaacatacttctactgctttgagtaaaatgttt 689

                                                                       
Query: 61  tttacttaataacactcggtaaaactgatgacaatttatatagagatattaaatgatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tttacttaataacactcggtaaaactgatgacaatttatatagagatattaaatgatgat 629

                                                                       
Query: 121 tggcctttttctttaaagagttaatgacagtatgttgtggaagaaaattctaatgcataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 628 tggcctttttctttaaagagttaatgacagtatgttgtggaagaaaattctaatgcagaa 569

                                                                       
Query: 181 tttgtttctatcaataaagttatcaataaatttattagcatatacaatatgtgctgataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tttgtttctatcaataaagttatcaataaatttattagcatatacaatatgtgctgataa 509

                                                                       
Query: 241 agtgaattttgtatataaaagggcatcaatagtatatgggaagaaatgggtgaatctgat 300
           |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agtgaaataagtatataaaagggcatcaatagtatatgggaagaaatgggtgaatctgat 449

                                                                       
Query: 301 atactattatttgttattatttcataaggtattaaactatgaaaacattccccatatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atactattatttgttattatttcataaggtattaaactatgaaaacattccccatatatt 389

                                                                       
Query: 361 ttcatgtaaagtggtcaaatgagattaggctgagcaaaaactatctatgtacacccaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttcatgtaaagtggtcaaatgagattaggctgagcaaaaactatctatgtacacccaaaa 329

                                                                       
Query: 421 tttaaaatacattatgcataactaaaatttagaggaaaggatattagggaataatagtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttaaaatacattatgcataactaaaatttagaggaaaggatattagggaataatagtgt 269

                                                                       
Query: 481 tgacaaaacttctcagaagtatctgctttgtgatgagcaagtgcagtacttgtggaattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgacaaaacttctcagaagtatctgctttgtgatgagcaagtgcagtacttgtggaattg 209

                   
Query: 541 tgtatact 548
           ||||||||
Sbjct: 208 tgtatact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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