Query= MSMg01no376_m12.b1 MSMg01no376_m12.b1 CHROMAT_FILE:
MSMg01no376_m12.b1 PHD_FILE: MSMg01no376_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:45 2005
(480 letters)
>mm_chr2_37494912_37495790
Length = 879
Score = 893 bits (462), Expect = 0.0
Identities = 471/474 (99%), Gaps = 1/474 (0%)
Strand = Plus / Plus
Query: 5 gaattcaagcctctgaccctacatagtagaaaactaaggtttgcaagttgtcttttgcat 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagcctcagaacctacatagtagaaaactaaggtttgcaagttgtcttttgcat 264
Query: 65 ttcacaacaagcaaataaatgcatagttgaggaaggagttatttgtttgtttgtttttaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcacaacaagcaaataaatgcatagttgaggaaggagttatttgtttgtttgtttttaa 324
Query: 125 gacttaaaaccaacagccagattatttgggaaaggacaagaagagagagaatagcaaaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacttaaaaccaacagccagattatttgggaaaggacaagaagagagagaatagcaaaag 384
Query: 185 aaggaaatagatagatgaataggataaaagtacatggtcgatatggatcagaatgaccca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggaaatagatagatgaataggataaaagtacatggtcgatatggatcagaatgaccca 444
Query: 245 ataaaatctaatagtttatacaatgaatatacacggtgtttttgtctttttaaactttat 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 ataaaatctaatagtttatacaatgaatatacacgg-gtttttgtctttttaaactttat 503
Query: 305 ttttaaaacttaaaaaaaagggctggagacatggctcagcaattaataacactgacttct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttaaaacttaaaaaaaagggctggagacatggctcagcaattaataacactgacttct 563
Query: 365 agaagtactgagttcaattcccagcaaccacactgtgggctcacaacatctataatggaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agaagtactgagttcaattcccagcaaccacactgtgggctcacaacatctataatggaa 623
Query: 425 gttatagatccattgatcatggtgtctctttacagcaacaaaaaccctaactaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gttatagatccattgatcatggtgtctctttacagcaacaaaaaccctaactaa 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 879
Length adjustment: 10
Effective length of query: 470
Effective length of database: 869
Effective search space: 408430
Effective search space used: 408430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_m12.g1 MSMg01no376_m12.g1 CHROMAT_FILE:
MSMg01no376_m12.g1 PHD_FILE: MSMg01no376_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:45 2005
(470 letters)
>mm_chr2_37653333_37654202
Length = 870
Score = 872 bits (451), Expect = 0.0
Identities = 463/467 (99%)
Strand = Plus / Minus
Query: 1 tatatgtggtcaataaaactggggagagggctgtagtcctgagtcctacaaggagctctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tatatgtggtcaataaaactggggagagggctgtagtcctgagtcctacaaggagctctg 608
Query: 61 ggggatggctgcctgagcaggcacttggccacctccaccagccatcctgcagaagcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ggggatggctgcctgagcaggcacttggccacctccaccagccatcctgcagaagcagag 548
Query: 121 gccactgtcctccagcctatgcatgcttgaggctctgagccacttacaccatccctcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gccactgtcctccagcctatgcatgcttgaggctctgagccacttacaccatccctcccc 488
Query: 181 atgagggaatcatagtggacactacatcatgggcaggactacacaaaggaacaaactcca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 487 atgagggaatcatagtggacactacatcatgggcaggactacacaaaggaacaagctcca 428
Query: 241 ctcctctttcttgtctcagcaagaacaccatctcccccaagtgagagtacttgtgtaggc 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctcctcccccttgtctcagcaagaacaccatctcccccaagtgagagtacttgtgtaggc 368
Query: 301 cacattggtgacactgacgtggaactgggatgtttcgttccgttggcattccacaagaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cacattggtgacactgacgtggaactgggatgtttcgttccgttggcattccacaagaat 308
Query: 361 catcttaggagctggcaactgaaacagttcacccaagagcctgtttcctctcccctctcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 catcttaggagctggcaactgaaacagttcacccaagagcctgtttcctctcccctctcc 248
Query: 421 caaggggcatggagatagctcggggcaaagtggcctcaccactacag 467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 caaggggcatggagatagctcggggcaaagtggcctcaccactacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
