BAC Information

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BAC

Clone NameMSMg01-376M16
Chromosome2 (Build37)
Map Location 136,308,429 - 136,308,927
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043487, LOC100043786, LOC100043788, Plcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492
Downstream geneBC034902, Ankrd5, Snap25, LOC668911, Mkks, 2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376M16.T7 (MSMg01no376_m16.b1)MSMg01-376M16.TJ (MSMg01no376_m16.g1)
ACCAG482025AG482026
length756744
length of high quality
(start - end)		503 (46 - 548)500 (76 - 575)
definitionCHROMAT_FILE: MSMg01no376_m16.b1 PHD_FILE: MSMg01no376_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:46 2005CHROMAT_FILE: MSMg01no376_m16.g1 PHD_FILE: MSMg01no376_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAGGATACCCTCCAGTCAATTTAGGGCTATTGAAATAAAAAAT
AAAAACAAACTGGGTTGTGGTAATGACAGATCTATTCCCAAGACTTCCCA
GTTAGAGGCAAGAGAATCCTAAGCATGAGACAAAAACATCAAACAATAAT
AACAAAACAACTTAGAAGATTTAGATGTAGTGGTTTGTAGTGAATATTGA
AGGTATTCTAACTGAGATTAGTGGCTGATATTACTAGTACAAAAGAGCAT
TATAATATGAAATTAATAAATATAATTCAAAAGCTGGAGATGAGAATATA
CTGATGTACTCATTTTCTTTTATTTGTTTGTTTGTTTGTTTTATACTCCA
AATTTTATTCTCCTCCCAACTGTTGCAGATCCTATACCTCCTCCCCTCTC
CCCTGTCTCCAGAGGGATGTCTCTACCCCACCCCAGCAAACCTCTAATCT
CCCTGGGGCCTCCCGTCTCTTGAGGGCTGGGTGCTTCTTCTCTGACTAAA
TCCAGACCCGCAGTCCCCTCCTGTATATATGTGTTCGGGATCTCACATCA
CCTGGTGTATGCTGCTTGGTTGGTGGCCCCGTGGCCGAAAGATTCCAGGG
GTCCAAATTATTTGGGAATGGTGGCCCCTCCTAAAGAGGGGCTCCCCCCA
AGTTTTCCCCGGTTTCCCCAATTTAACCATAGGGGCCCGCAGTTTTTGTC
TTTTTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGATCAACATGTCTGTTTTGATA
GCAATACCATGTTGTTTTTATTGCTATAGTTTTGTAGTACAACTAGAAAT
TGGGAATGGTGAAACCTCCAGCAGTACTTTTATTGTTTGACATTATTTTA
CCATTCTTGGCTCTTTCATTTGCTTGTTTGTTTGTTTGGTTGGTTTTCCA
TAGAAAGCTGATAATTGCCCTTTGCAGGTCTGTGAGAAATTGTGGTCAAA
TTTTGATGAAGATCATATTGAATCTGAAGATTGCATTTGGTAGCATGGCC
ATTTTTACTATGTTGATTTTATTAATTCATGAGCATGGGAAAACTTTTCA
TCTTCCTATATATTCAATTTCTTTCTTTAGTATCTTAAAGTTTTTAATCA
TACAAGCCTTTCACTCTATTATTTAGAGCACCCCCAATTTACTTTTTTTT
TGAAGCTATTGTGAGAGGTACTGCTTCCCTGACTTTTCCTCAATCTATTT
GCCATTTATATATTGGAAGGCTACTGATTTTTGTGTATTAATTTTGTATC
CTGCCCTTGTAATGAAAATGCTTACCACCTATGGAAATTTCTTGATGGAG
TCTTTCCCCCCGGCAAGGAAAGAAAAATCTTTCCCCCCTTCATCCCAAAA
ATCCACAAAACCCTTGGAAAACCTTTAAAAAGGTCCTAATTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_m16.b1 MSMg01no376_m16.b1 CHROMAT_FILE:
MSMg01no376_m16.b1 PHD_FILE: MSMg01no376_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:46 2005
         (503 letters)



>mm_chr2_136308226_136309127
          Length = 902

 Score =  913 bits (472), Expect = 0.0
 Identities = 493/500 (98%), Gaps = 1/500 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcaggataccctccagtcaatttagggctattgaaataaaaaataaaaacaa 63
           ||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattcttcaggataagttccagtcaatttagggctattgaaataaaaa-taaaaacaa 262

                                                                       
Query: 64  actgggttgtggtaatgacagatctattcccaagacttcccagttagaggcaagagaatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 actgggttgtggtaatgacagatctattcccaagacttcccagttagaggcaagagaatc 322

                                                                       
Query: 124 ctaagcatgagacaaaaacatcaaacaataataacaaaacaacttagaagatttagatgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctaagcatgagacaaaaacatcaaacaataataacaaaacaacttagaagatttagatgt 382

                                                                       
Query: 184 agtggtttgtagtgaatattgaaggtattctaactgagattagtggctgatattactagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agtggtttgtagtgaatattgaaggtattctaactgagattagtggctgatattactagt 442

                                                                       
Query: 244 acaaaagagcattataatatgaaattaataaatataattcaaaagctggagatgagaata 303
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acaaaagagcgttataatatgaaattaataaatataattcaaaagctggagatgagaata 502

                                                                       
Query: 304 tactgatgtactcattttcttttatttgtttgtttgtttgttttatactccaaattttat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tactgatgtactcattttcttttatttgtttgtttgtttgttttatactccaaattttat 562

                                                                       
Query: 364 tctcctcccaactgttgcagatcctatacctcctcccctctcccctgtctccagagggat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 563 tctcctcccaactgttgcagatcctatacctcctcccctctcccctgtctccaaagggat 622

                                                                       
Query: 424 gtctctaccccaccccagcaaacctctaatctccctggggcctcccgtctcttgagggct 483
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtctctaccccaccccagcagacctctaatctccctggggcctcccgtctcttgagggct 682

                               
Query: 484 gggtgcttcttctctgacta 503
           ||||||||||||||||||||
Sbjct: 683 gggtgcttcttctctgacta 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 902
Length adjustment: 10
Effective length of query: 493
Effective length of database: 892
Effective search space:   439756
Effective search space used:   439756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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