BAC Information

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BAC

Clone NameMSMg01-376M18
Chromosome2 (Build37)
Map Location 52,409,378 - 52,409,757
singlet/doubletsinglet
Overlap geneCacnb4
Upstream geneLOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a
Downstream geneOTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376M18.T7 (MSMg01no376_m18.b1)MSMg01-376M18.TJ (MSMg01no376_m18.g1)
ACCAG482029AG482030
length782756
length of high quality
(start - end)		421 (45 - 465)380 (73 - 452)
definitionCHROMAT_FILE: MSMg01no376_m18.b1 PHD_FILE: MSMg01no376_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:46 2005CHROMAT_FILE: MSMg01no376_m18.g1 PHD_FILE: MSMg01no376_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTGTCCATGAGTTTTATCATGAAGGGGTGTTGGATTTTGTC
AAATGCTTTCTCAGCATCTAATGATATGATCATGTGATTTTTGTCTTTGA
GTTTGTTTATATAGTGGATTTCGTTGATAGATTTCCATATATTAAACCAT
CCCTGCATCCCTGGGATGAAGCCTACTTGGTCATGATGGATGATTGTTTT
GATGTGTTCTTGGATTCGGTTTGCGAGGATTTTATTGAGTATTTTGCATC
GATATTCATAAGGGAAATTGGTCTGAAGTTCTCTTTCTTTGTTGGATCTT
TGTGTGGCTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAATTGGGT
AGAGTACCTTCTGTTTCTATTTTGTGGAATAGTTTGAGGAGAGTTGCAAT
TAGGTCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAATCCATCTGGGC
CCTGGGTTTTTTTGGTGCCGAAACATTTAAAGACTGCTTCTGTTTCTTTT
TAAAAAAAGGCACTGTCTTAAACTTTATTCCTAACCTCCGAATAACTTAG
GCACCCGTCATACTGCCACTCTAATTTTTCCTTTTTTCCTTATTATTCCT
CTTTTCTTTGTATATCCCCGTTCATTCTTTATTCTCTTTATCATCTATCT
TTTCCATCCTCAATAACTTATTTTCCCACATCCTCTCTCCACCTTTTCTT
AATTTCTCTTAACGCCACCACAACACCATCAG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATTTTAAAGTTGTTTTATGCGAAGATA
TGTCCTTGCGCTTCTTAACGAGGAAGATAAATTTCAAACGGAGGGGTGAT
GTGTTTAAGGGCCTCCAGAAAAATGTCCTAGAGATACTTAGGTTTGGATT
TCTCTTGGAAGCAGGCAGACCAAGGCCTTTATGCTTCTGGGGCAGAGAGT
CTTGACTGTCCATTTCTAGAGTATGAAAACTGGTCTGTAACCAAGTCTGA
AGATGGGGTTTTGGCATCCGTGGCTAGTGAAGTAAATCAAGTGCTTATGG
TTTGTATGAGAGATCTCACGGAGACATGTAGGTGTTTTACTTAGCTGAGC
TATTGTGGTAATAAGTCAGGGTCTGAGAAGTAAATGATGTACATACCCTT
CCTTCAATCAAATTCCTATAAATTCTTAAATATGTATAGCGAATGCTTTC
CATACTGAATTATGATGATGCTCAGAGAGAAATTCCTTAAATTTGACCAG
AGGCCCTGAATTTGGCCCTCCTGCTACTTCCCCGGTTGGTTCCCATTTGG
GGGGAAAAAAATATAAAGGGGATCCCTCCTTTCCCCCATCTCTTTTTCCC
CTCGCTTTTTGGACCCCCCCCACCCCTTTTCCCCTTTCTTCCATTCGGTC
CTCCCTGCACTATTCCTTCTCCTTTGGTTCATTCCCTCGCGCCACTCTTC
CCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_m18.g1 MSMg01no376_m18.g1 CHROMAT_FILE:
MSMg01no376_m18.g1 PHD_FILE: MSMg01no376_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:46 2005
         (380 letters)



>mm_chr2_52409178_52409957
          Length = 780

 Score =  696 bits (360), Expect = 0.0
 Identities = 375/380 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattttaaagttgttttatgcgaagatatgtccttgcgcttcttaacgaggaagataaat 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 580 cattttaaagttgttctatgcgaagatatgtccttgcgcttcttaacgaggaagataaac 521

                                                                       
Query: 61  ttcaaacggaggggtgatgtgtttaagggcctccagaaaaatgtcctagagatacttagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttcaaacggaggggtgatgtgtttaagggcctccagaaaaatgtcctagagatacttagg 461

                                                                       
Query: 121 tttggatttctcttggaagcaggcagaccaaggcctttatgcttctggggcagagagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttggatttctcttggaagcaggcagaccaaggcctttatgcttctggggcagagagtct 401

                                                                       
Query: 181 tgactgtccatttctagagtatgaaaactggtctgtaaccaagtctgaagatggggtttt 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 400 tgactgtccatttctagagtatgaaaactggtctgtaaccgagtctgaagatggggtttt 341

                                                                       
Query: 241 ggcatccgtggctagtgaagtaaatcaagtgcttatggtttgtatgagagatctcacgga 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ggcatctgtggctagtgaagtaaatcaagtgcttatggtttgtatgagagatctcacgga 281

                                                                       
Query: 301 gacatgtaggtgttttacttagctgagctattgtggtaataagtcagggtctgagaagta 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 280 gacatgtaggtgttttacttagctgagctattgtggtaataagccagggtctgagaagta 221

                               
Query: 361 aatgatgtacatacccttcc 380
           ||||||||||||||||||||
Sbjct: 220 aatgatgtacatacccttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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