BAC Information

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BAC

Clone NameMSMg01-376N18
Chromosome2 (Build37)
Map Location 146,703,371 - 146,859,989
singlet/doubletdoublet
Overlap geneGm114, Xrn2
Upstream geneRin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik, LOC668918
Downstream geneNkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik, LOC100043820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376N18.T7 (MSMg01no376_n18.b1)MSMg01-376N18.TJ (MSMg01no376_n18.g1)
ACCAG482076AG482077
length758751
length of high quality
(start - end)		489 (44 - 532)501 (74 - 574)
definitionCHROMAT_FILE: MSMg01no376_n18.b1 PHD_FILE: MSMg01no376_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:51 2005CHROMAT_FILE: MSMg01no376_n18.g1 PHD_FILE: MSMg01no376_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,859,504 - 146,859,989)(146,703,371 - 146,703,871)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACAAAGACTAACCCCTTTCGTCTAAAGCTATCAATAGAAAAAAGGG
AATTCTGATCTATTGTTGATTCTAGGCCAAGTTAATATACAGGGTAGGGT
TCTTTTTCTCTCTTCTAAAAGAACAGCCATGATTTCGATTCTCTGAAACT
GGGCTGATATTGCTCCCAATTAACAATGGCCTATTCCACAGGTTTACAAA
CCCATACTCAGCAAAGTGAAACAATAGTAAAATGCTCGTGGCTGCTGCTG
TGGCCTAAAACAGAAAAAAGCCAGCAGGTACAAGTACTGGAGGCTACCCC
AGGCAGATGTACTTGTGTCTCTTCTAAGTGTATCCTGTCAAGTGCAATAC
AAAACTTTAATGAGACCTGAAATTGGTGTTTTCCGCCACAAGGTGGGTTT
TGTTGTGGTTGGTTTTTAAGATAGCTTCCTTGTGTAGCCCAAGCTGTCCT
GGAACCCAGATATCTACTTGCCTCTGCTGGGATTATAGGTGTGCACCACC
ACACTCAGCTCACGAGAGGGGTTTTTACAAAATATATCCCGTATGAATAC
ATGGAAACCTCCAATTACCAAGGGGGAAACTGGAATTCCTTCCCCTTTAT
TCCGGGGGTCTGGGAAACCCACCCCAAAAAAAACGGGGCGGGAAGTTTTT
TTGCCCCCTCCCCCCGGTCAAAAAAAATTTTAAGGTGGTTTGGCCCACCC
ATAAGCCC

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCCAGGGTCAGAAACTGCTCTGAGAA
GACTCAGAACTTAAAAGGCTTATCCTGTTGTGAAGATTAATTTTAAAAGA
AAAGAAAAGTCTTAGAACCTGATTATAGCAAATGGGAAAGCTGCCAATCA
GTAGAAGCCCATTTTGTCCTTCACCAGAGTGTTTTATTTTTCAAATGTTA
AGTCAGTTCAAGTATGAAATAACCCCATAGCAAGTGGAAGTTACTTACAA
GTGTCTCATACAACTTTTGATAACAAACTGTTAACAATTAACAATTGTGA
AAGAATTTGTTAAACACTTGCTGGCTGGGGTGTAAACAGTGCAGCCACTT
TAGGAAACAGTTGAACAACTCCTAGCCACAAACTCCATACCTATTTACTG
GAAAACATATCTTCCTTAAATCTTGAACCGAAGTGCACAGCAGGAGCTTT
TTCAATAGCCACAATAGGAATGATTCAAATGTGTATCATTTGATGAAAGG
ACAAACAAAAAGATTACATACTGTGTAATTTCATGTGTACAAATTGCTCA
GTATAGGCAAATCTATAAAGTTAGAAAAGTTAGCTGTTTCCAAGGCGGGG
ATCTGGCTGAAGATCATTGAGGAAGATTGCTAAACATGTGGNNGTTTCTC
TTGGAGTGATCCAAAGGGTTCTAAAATTCTACACTAGGTATAAATTCCGT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_n18.b1 MSMg01no376_n18.b1 CHROMAT_FILE:
MSMg01no376_n18.b1 PHD_FILE: MSMg01no376_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:51 2005
         (489 letters)



>mm_chr2_146859371_146860259
          Length = 889

 Score =  940 bits (486), Expect = 0.0
 Identities = 486/486 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacaaagactaacccctttcgtctaaagctatcaatagaaaaaagggaattct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggaattccacaaagactaacccctttcgtctaaagctatcaatagaaaaaagggaattct 560

                                                                       
Query: 64  gatctattgttgattctaggccaagttaatatacagggtagggttctttttctctcttct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gatctattgttgattctaggccaagttaatatacagggtagggttctttttctctcttct 500

                                                                       
Query: 124 aaaagaacagccatgatttcgattctctgaaactgggctgatattgctcccaattaacaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaaagaacagccatgatttcgattctctgaaactgggctgatattgctcccaattaacaa 440

                                                                       
Query: 184 tggcctattccacaggtttacaaacccatactcagcaaagtgaaacaatagtaaaatgct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tggcctattccacaggtttacaaacccatactcagcaaagtgaaacaatagtaaaatgct 380

                                                                       
Query: 244 cgtggctgctgctgtggcctaaaacagaaaaaagccagcaggtacaagtactggaggcta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cgtggctgctgctgtggcctaaaacagaaaaaagccagcaggtacaagtactggaggcta 320

                                                                       
Query: 304 ccccaggcagatgtacttgtgtctcttctaagtgtatcctgtcaagtgcaatacaaaact 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccccaggcagatgtacttgtgtctcttctaagtgtatcctgtcaagtgcaatacaaaact 260

                                                                       
Query: 364 ttaatgagacctgaaattggtgttttccgccacaaggtgggttttgttgtggttggtttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttaatgagacctgaaattggtgttttccgccacaaggtgggttttgttgtggttggtttt 200

                                                                       
Query: 424 taagatagcttccttgtgtagcccaagctgtcctggaacccagatatctacttgcctctg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 taagatagcttccttgtgtagcccaagctgtcctggaacccagatatctacttgcctctg 140

                 
Query: 484 ctggga 489
           ||||||
Sbjct: 139 ctggga 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_n18.g1 MSMg01no376_n18.g1 CHROMAT_FILE:
MSMg01no376_n18.g1 PHD_FILE: MSMg01no376_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:51 2005
         (501 letters)



>mm_chr2_146703171_146704071
          Length = 901

 Score =  969 bits (501), Expect = 0.0
 Identities = 501/501 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccagggtcagaaactgctctgagaagactcagaacttaaaaggcttatcctgttgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccagggtcagaaactgctctgagaagactcagaacttaaaaggcttatcctgttgtga 260

                                                                       
Query: 61  agattaattttaaaagaaaagaaaagtcttagaacctgattatagcaaatgggaaagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agattaattttaaaagaaaagaaaagtcttagaacctgattatagcaaatgggaaagctg 320

                                                                       
Query: 121 ccaatcagtagaagcccattttgtccttcaccagagtgttttatttttcaaatgttaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaatcagtagaagcccattttgtccttcaccagagtgttttatttttcaaatgttaagt 380

                                                                       
Query: 181 cagttcaagtatgaaataaccccatagcaagtggaagttacttacaagtgtctcatacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagttcaagtatgaaataaccccatagcaagtggaagttacttacaagtgtctcatacaa 440

                                                                       
Query: 241 cttttgataacaaactgttaacaattaacaattgtgaaagaatttgttaaacacttgctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttttgataacaaactgttaacaattaacaattgtgaaagaatttgttaaacacttgctg 500

                                                                       
Query: 301 gctggggtgtaaacagtgcagccactttaggaaacagttgaacaactcctagccacaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctggggtgtaaacagtgcagccactttaggaaacagttgaacaactcctagccacaaac 560

                                                                       
Query: 361 tccatacctatttactggaaaacatatcttccttaaatcttgaaccgaagtgcacagcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccatacctatttactggaaaacatatcttccttaaatcttgaaccgaagtgcacagcag 620

                                                                       
Query: 421 gagctttttcaatagccacaataggaatgattcaaatgtgtatcatttgatgaaaggaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagctttttcaatagccacaataggaatgattcaaatgtgtatcatttgatgaaaggaca 680

                                
Query: 481 aacaaaaagattacatactgt 501
           |||||||||||||||||||||
Sbjct: 681 aacaaaaagattacatactgt 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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