BAC Information

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BAC

Clone NameMSMg01-376N22
Chromosome2 (Build37)
Map Location 87,649,772 - 87,650,009
singlet/doubletsinglet
Overlap geneOlfr1145
Upstream geneOlfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275
Downstream geneOlfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376N22.T7 (MSMg01no376_n22.b1)MSMg01-376N22.TJ (MSMg01no376_n22.g1)
ACCAG482084AG482085
length772770
length of high quality
(start - end)		336 (48 - 383)238 (286 - 523)
definitionCHROMAT_FILE: MSMg01no376_n22.b1 PHD_FILE: MSMg01no376_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:52 2005CHROMAT_FILE: MSMg01no376_n22.g1 PHD_FILE: MSMg01no376_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGATCTTTCCCAGACTTTTATCATGAATGGGTGTACAGGGGA
AAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCG
ATAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACC
GTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTA
TCCAAAATTGGATAGGGAACTAATATCCAATATATATAAAGAACTCAAGA
AGGTGGACTCCAGAAAATCAAATAACCTCATTAAAAATGGGGCTCAGAAC
TGAACAAAGAATTCTCACCTGAGGAATACCGAGATGGCAGCAGAAACACC
TGAAAAAATATTCAACATCCTTAATTATCAGGGAAATGCAAATCAAAACA
ACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAATCTC
ATGTGACAGCAGATGATGGCGAGGATGTGGAGAAAGGGGGACACTCCTCC
ATTGTTTGTGGGATTGCAAGCTTGTACNACCACTGTGGAAAACATTCTGG
CGGGTCCCCAAAAAATTGGAATAAGACTTACGGAAGAACCCCGCATACCT
CCCCTTGGGTTATTCCCGAAAAAGGCCCAACCGGGAAAAAGAAAAAGGTT
CCCCTTTTGTCTTAAGGGCCCTTGTTTTAAATATCCCAAAAGCGGAAAAG
AACCCAAAGGCCCTCCCCCAAG

CAATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATTCCTTGTCATCAATTTTTAATGA
TGAAGGAAACTAGTTATGTAGATATTATATTTATTACACAATTGTTTTAC
ATTAAAAATGATGCCTTTGAATATACCATACAAATACACTGACACTCATA
GAACATGTATGTAAATAGCGAATATAACATCAACGAGCCTATTTTGAATA
TATTTTAAATTTAACGAATAATGAGGTTACATAAACACTACAAATTAAAC
ATTGTATCTTATTATTATAACATAAATAAAATTTATTAATACTGTAAAAA
TTAATACAATTTCTTAAGAATGATAAAACATGAGGTTTTGCACAGACACT
TATTAACAGCAATGAATTTGTACAGAGGATGGATAACTAAGAATGAAAAC
CATTCTTGGATTGTAGAAAAGGAAACAAAGCTAAAGACAGAAATGACTCA
GACTCCGACTAAATCCTTTCTACAGATGAAACATGATGAAATTGAGGCAG
AAGTCAACATTTCTACAGTGATACAATTTGTTTCTGCTGGGATTCTCTGC
TCTTCCCCATCTCCAAGGAAATCTGTCTGCACTGTTCCCCATCATTTATA
TGATTAACCCCCCCGGCAATGCCCTCCTTAAATAAAAACTAGGCTTTGCC
ATACTTGGCATAAACCCACGCATTTTTTTTTGCGCAATTTTTTCCCCCCT
CAACACCGTTTGGTACCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_n22.g1 MSMg01no376_n22.g1 CHROMAT_FILE:
MSMg01no376_n22.g1 PHD_FILE: MSMg01no376_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:52 2005
         (238 letters)



>mm_chr2_87649572_87650209
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactacaaattaaacattgtatcttattattataacataaataaaatttattaatactgt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 cactacaaattaaacattgtatcttattattataaaataaataaaatttattaatactgt 260

                                                                       
Query: 61  aaaaattaatacaatttcttaagaatgataaaacatgaggttttgcacagacacttatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaattaatacaatttcttaagaatgataaaacatgaggttttgcacagacacttatta 320

                                                                       
Query: 121 acagcaatgaatttgtacagaggatggataactaagaatgaaaaccattcttggattgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagcaatgaatttgtacagaggatggataactaagaatgaaaaccattcttggattgta 380

                                                                     
Query: 181 gaaaaggaaacaaagctaaagacagaaatgactcagactccgactaaatcctttctac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaaggaaacaaagctaaagacagaaatgactcagactccgactaaatcctttctac 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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