BAC Information

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BAC

Clone NameMSMg01-377A08
Chromosome2 (Build37)
Map Location 74,703,564 - 74,703,934
singlet/doubletsinglet
Overlap geneMtx2
Upstream geneAtf2, Atp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1
Downstream geneLOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377A08.T7 (MSMg01no377_a08.b1)MSMg01-377A08.TJ (MSMg01no377_a08.g1)
ACCAG482200AG482201
length791756
length of high quality
(start - end)
375 (52 - 426)389 (81 - 469)
definitionCHROMAT_FILE: MSMg01no377_a08.b1 PHD_FILE: MSMg01no377_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:04 2005CHROMAT_FILE: MSMg01no377_a08.g1 PHD_FILE: MSMg01no377_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTATTGATAATAGGGACATACCTTCCATATCTGTCTGT
TGAGTGTTGTGCTCCCAAAGGCTTGCCCTTTCTTTGTAGTGTTATCACAT
AGATGCAGATGAAGCTTTTATTGGTGCCAGGCACCTCATCCATTACCCTC
AGGCTGACTAAGCCAGAGAGAAGTGAATATACTGAAAAGTAGCAGGAAGA
AGCCTGCTGTTAGTATGAACTCTAGTTGAACTAAGTCTGACAGCAGGTTC
TATCATTTCATATTTGGAGTAGAGTAGCTTGCTATTTAGAAAAGGTTTTC
TTTTATCTCTAATAATTGTATTAAGCAGCAATGTTTATTAAAGTGGAATA
TTACTGTCTAATGCGGCATTTACTTAAAGACACCAGTCCCATACCCCCCC
CCAGCATTTATTTAAAGAAATCAGTCCCGCCCCCCCCTTTTCTCCTTCAC
TTCCTCCTATTCTATGCGAATCTATATGTCTCTTGCATGTTTGCCCATCT
CCTTCCCCCTACTTCGATTCCGTCTCTCTATGCTATCTTCTTCTCTTACC
TTTTTTGCGCTTCCTCTCTTTTCTCTCTTCGCCGTAGTATATCATATCTC
TCCCCCCTCCTCTTTTTCTTTTTCCCTCCCCTTTCCCCTCCTTTCTTTTA
TCCCCCCTTTCTTCTCTCCCCCCTTTTTTCCCCCCTCCCTTTCCCTCCCC
TTCTTCTTTTCCCTCCCCTTTTCCGTCCAGTCCTTCCTCCG
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGCAATACCGAAT
GGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATCGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCTATATGCCCCTTCTAAGAGGAATGTATACCG
AAAATGTGGGATCTCTAACTAATTGGATTACACCCCCCTATTATAATAAC
AGGATTTATGTATTTTCTTATCCAATGGAAGGGACTGCACCGACTTTTCT
CTAAGGGGGTTTACCCTTTTTTTTCATTCTTTTCCTCCCCCACTCCCTTT
TATCCGATTATTTTCCTATCCCCTTAATTTTCTCCCCTTATCCCTTTTTT
TTTCTTCTTTTTCTCTCCCCATGTAAACTGCCTTGTATTCATTTCCGCCC
TTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_a08.b1 MSMg01no377_a08.b1 CHROMAT_FILE:
MSMg01no377_a08.b1 PHD_FILE: MSMg01no377_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:04 2005
         (375 letters)



>mm_chr2_74703360_74704134
          Length = 775

 Score =  702 bits (363), Expect = 0.0
 Identities = 369/371 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactattgataatagggacataccttccatatctgtctgttgagtgttgtgctcc 64
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgttgataatagggacataccttccatatctgtctgttgagtgttgtgctcc 264

                                                                       
Query: 65  caaaggcttgccctttctttgtagtgttatcacatagatgcagatgaagcttttattggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaggcttgccctttctttgtagtgttatcacatagatgcagatgaagcttttattggt 324

                                                                       
Query: 125 gccaggcacctcatccattaccctcaggctgactaagccagagagaagtgaatatactga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccaggcacctcatccattaccctcaggctgactaagccagagagaagtgaatatactga 384

                                                                       
Query: 185 aaagtagcaggaagaagcctgctgttagtatgaactctagttgaactaagtctgacagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagtagcaggaagaagcctgctgttagtatgaactctagttgaactaagtctgacagca 444

                                                                       
Query: 245 ggttctatcatttcatatttggagtagagtagcttgctatttagaaaaggttttctttta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggttctatcatttcatatttggagtagagtagcttgctatttagaaaaggttttctttta 504

                                                                       
Query: 305 tctctaataattgtattaagcagcaatgtttattaaagtggaatattactgtctaatgcg 364
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctctaataattgtattaagcagtaatgtttattaaagtggaatattactgtctaatgcg 564

                      
Query: 365 gcatttactta 375
           |||||||||||
Sbjct: 565 gcatttactta 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)