BAC Information

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BAC

Clone NameMSMg01-377F09
Chromosome2 (Build37)
Map Location 60,958,335 - 61,134,827
singlet/doubletdoublet
Overlap genenone
Upstream geneBaz2b, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
Downstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377F09.T7 (MSMg01no377_f09.b1)MSMg01-377F09.TJ (MSMg01no377_f09.g1)
ACCAG482442AG482443
length791799
length of high quality
(start - end)		254 (72 - 325)306 (78 - 383)
definitionCHROMAT_FILE: MSMg01no377_f09.b1 PHD_FILE: MSMg01no377_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:28 2005CHROMAT_FILE: MSMg01no377_f09.g1 PHD_FILE: MSMg01no377_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,958,335 - 60,958,570)(61,134,522 - 61,134,827)
sequence
TTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAGGTACCGAGCTCAGGTGGGCGCTGAACTTTTGTTGTCAAA
TGCCTTTACCCACAAGGCCATCTCACCAGACTCAACATTTGCTTTTTCCA
CAATAGTCATTCTGTCTTAGGCTAGATGGAATTGTAAAGTAATATAATTT
GTGGTTAAGAATGTTGGACACTACAATGGCTATTTTTATTTCTCCTTCTG
AGAACCATCTGTTCAATCCATTGCTCATTTATTGATTGGAAGGGTTTTGA
TTTTTTTTTTTTGATCTTTTTCTGGAGCTTAGCTCTTTACCTATTAAAGA
CAGCTAATTTTCTGACACCAGGTTGCCAAAGTTTTTCTCCCATTAAGCAT
GTTGTTGACCTCGCCCACGCTTTTTTTTTGCTGTTAAGAAGCTTTTCATT
CTTACGTATTACCTTTCACCAGCTTTTCCTGTTATTTCTCTGTCGTTTCT
TGTCTTTCCACTCTTTCAAAATGTCCTACCCCGATAGTTTTTATCTTGTA
CCCTCATTCCCTTCAATTTCCTTCTCCCCTTACATTTCCTACTATTCCCT
TCCTCCTCTTTCCCTTTCTTTCTCTTTCTTTCCCTCTTTTGCTTCCCTCT
CACCATTCACATTTTATCTTCGCCAATTTTCCTTTCCCTCCTCTCTCTTT
TCCTCTCTATTCCCCTTTTTTTTTCCCCCTTCTTCTCTCTCTTTATTCTT
TCCCCTACCTCTTTCTCCTTTCCTTCTCCCCTTTTCCTTTC

TTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGACAGTGAGCTCTGGTGGGTT
GAGCCATAGAGTGGAGAGAATGGAGTTAGGCAGTTGGCTAGTTTTCTTCT
CAGTCTTTCAGGGTCGTCCTGCCATATGACTGGTGAAAAGCCATTGGGCT
TTCGCTGTCTCCATCCTCCCTCCAAATGGAGAAGCTGAATAGCTTTCCGT
CTGCCTCACGGATGACACTAGGTCTGTGATAAGCCTTAAAGGTTTAAAAG
ACAAATGGTATAATGCACTTCACAGTGATGGCTTAGAAATTATATAGTTA
TACTGGGGGTGGGGACAGGGTAGGAGAGAGAGGGGACAGCATTTTATTTT
TATCCCCTTTTTCACCCCCCCTTTTCTTTTCCTTTTTTTTTTTCCCCCCC
CTCCCTTTTTCCCTTTTTTTTATTTCTTTCCCTTCTTCTCCCCCTCTTTT
TACACCCTCCTTTCGCTTCTCTTTTACCCCCCCTCTTTTTTCCTCCCCTT
TTTCACCTTTTTTTCTCTCACTCACTTTTCTTTCCCTTTTTCTCTCTTTT
TCTTCCCTCTCTTTTTCTCCTCTCTCCCTTTTTTCTCTCCCACCCCCACT
TTCCCCCCCCCTATTTACCTTTTTTTCTTAATTATCCCAACACCTCCTCT
CCCCACCACCTCCACCTTTTCTCTCTTTCTTCTTTTATCTCCCCCTCTTT
TCTCCCCCCTTCTTCCCCAATTTTATATATTCTTTCACTCTTCCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_f09.b1 MSMg01no377_f09.b1 CHROMAT_FILE:
MSMg01no377_f09.b1 PHD_FILE: MSMg01no377_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:28 2005
         (254 letters)



>mm_chr2_60958135_60958788
          Length = 654

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtgggcgctgaacttttgttgtcaaatgcctttacccacaaggccatctcaccagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtgggcgctgaacttttgttgtcaaatgcctttacccacaaggccatctcaccagac 260

                                                                       
Query: 61  tcaacatttgctttttccacaatagtcattctgtcttaggctagatggaattgtaaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaacatttgctttttccacaatagtcattctgtcttaggctagatggaattgtaaagta 320

                                                                       
Query: 121 atataatttgtggttaagaatgttggacactacaatggctatttttatttctccttctga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 atataatttgtggttaagaatgttggacactacaatggctatttttatttttccttctga 380

                                                                   
Query: 181 gaaccatctgttcaatccattgctcatttattgattggaagggttttgattttttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaccatctgttcaatccattgctcatttattgattggaagggttttgattttttt 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no377_f09.g1 MSMg01no377_f09.g1 CHROMAT_FILE:
MSMg01no377_f09.g1 PHD_FILE: MSMg01no377_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:28 2005
         (306 letters)



>mm_chr2_61134322_61135027
          Length = 706

 Score =  592 bits (306), Expect = e-173
 Identities = 306/306 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggacagtgagctctggtgggttgagccatagagtggagagaatggagttaggcagttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tggacagtgagctctggtgggttgagccatagagtggagagaatggagttaggcagttgg 447

                                                                       
Query: 61  ctagttttcttctcagtctttcagggtcgtcctgccatatgactggtgaaaagccattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctagttttcttctcagtctttcagggtcgtcctgccatatgactggtgaaaagccattgg 387

                                                                       
Query: 121 gctttcgctgtctccatcctccctccaaatggagaagctgaatagctttccgtctgcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gctttcgctgtctccatcctccctccaaatggagaagctgaatagctttccgtctgcctc 327

                                                                       
Query: 181 acggatgacactaggtctgtgataagccttaaaggtttaaaagacaaatggtataatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acggatgacactaggtctgtgataagccttaaaggtttaaaagacaaatggtataatgca 267

                                                                       
Query: 241 cttcacagtgatggcttagaaattatatagttatactgggggtggggacagggtaggaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttcacagtgatggcttagaaattatatagttatactgggggtggggacagggtaggaga 207

                 
Query: 301 gagagg 306
           ||||||
Sbjct: 206 gagagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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