BAC Information

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BAC

Clone NameMSMg01-377H14
Chromosome2 (Build37)
Map Location 24,850,760 - 24,851,186
singlet/doubletsinglet
Overlap genePnpla7
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41
Downstream geneNelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377H14.T7 (MSMg01no377_h14.b1)MSMg01-377H14.TJ (MSMg01no377_h14.g1)
ACCAG482546AG482547
length820779
length of high quality
(start - end)		52 (70 - 121)427 (76 - 502)
definitionCHROMAT_FILE: MSMg01no377_h14.b1 PHD_FILE: MSMg01no377_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:40 2005CHROMAT_FILE: MSMg01no377_h14.g1 PHD_FILE: MSMg01no377_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGAATCCGCGG
AATTCAGGAATTCACACGTTTTGACACTCTTGAGCCTGAGAATGATGTTT
GGTTTTTATTTGTGTTTGTCTCCAGGTGTTTTTATTTTTTTCTACTCCCC
TTATCCCCTTCTATTCCCTCTAACCCCCCCCTATCCATCTCTCTCCACTT
TTTTTCCACCCTCTCACCTTTCCTTTTACCCTCCCCCCAACCACCTCTTT
TTCTCTCTTCCCCCCTCCTTATTACCCTATCCACTTCCCATCTCCCCTTC
CCCTCTTCCCTCACCCTTTTTTTTTTTCTACCTTTCTTTTCCCTTTTCCT
TTTCCTTCACTTTTTTTTTTTATACTTAATCCCCTTCCTCCAACTTAACA
CCTATTTTCTTCACCTCCTTTCCCCCCCCCCTTTCCTCTCTTCCCATTAC
TCATCTTCTTATCCCCTCCCCCTTTACCCCTTTATTTCACTCCTTCCAAT
TTTTCCCACCCTTCTCTCCTCCTTTACCTCTTTTTCCTCCTCATTTCCTA
TTCATACCCCCTACATTCTCTACCCTCTCTCTATTCTCTCATTCATACCT
CACTTAACCAAACCCCCAACCTCCACCTTTTCCCCCCTTTTACATCCTTT
TCCCTACCCTTCCTTCATCTTTTTTCTCCCTTAATACCCCCCTATTCTCT
CCTTATTATACATTATTTACCCCTCCCATTTTCCTTTTCCCCTCTCATTT
TCCCCTTTATTATCCCCACTTATCCATCCTTACTATTTTCCCCCACCCAT
TCTATTATCACTCCTTACAT

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCATTACATTAGGCTAGAAGGCCA
ACAAGCTTTGCTGGAAACATGCACTCAGCTTTTTTACAATTTTTAAAAAA
TAGTACTCCCTAGAATCCACACGCGCAGCAGTAAATCCTGCCAGCAAAGC
CCGTTCCGCATCCTCTGACTCACCCACGATGCTGATGCTGACTGTGCTCA
GTCCTCATGGGGTCCATGCCAGTGTGCAGCTCCAGTGCCTGAGATGCCCG
TGGCACACAACAAAGCCAGTCTAAAAGAGACTTACCTGCACAACCCTGAC
CAGAGTTTCAGGATATTTCTCAAACACTCCTTGAAAAGCTGCTGCAGGAA
GCCAGAGCACGGTGGACGAGACAGCGGCACGGGCAGAAACTGTTTTGTAT
GGTGCAGTGTGACCCTGTAACAATGACTCTGTTAGTCCTTCATGAAGGAC
CCAGAAAGATCCTGGGGAATTTCCACAACCCACAGAGGCTTCTGGAAGCC
CTGCCTGGGTTCTACTCACAAAACTGTGGACTTAACAGGCTTGCTATGGA
AACTGGGAATTTTTAATGGAAACAAAAATTTGCCCCGCCAAACATTACCA
AAAATTTCCGGGGTTGGGGGGCGCACCCCTTTATTCCCCACCTTGGTAGG
ATGAAGAGGTGATATTTTTAAATTCGCGCCCACCCGTGTATTTTTAGTCA
ATTTTTCTCAGTACCCGTTTCCTTCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_h14.g1 MSMg01no377_h14.g1 CHROMAT_FILE:
MSMg01no377_h14.g1 PHD_FILE: MSMg01no377_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:40 2005
         (427 letters)



>mm_chr2_24850560_24851386
          Length = 827

 Score =  779 bits (403), Expect = 0.0
 Identities = 421/427 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accattacattaggctagaaggccaacaagctttgctggaaacatgcactcagctttttt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 627 accattacattaggctagaaggccaacaagctttgctggaaacatggactcagctttttt 568

                                                                       
Query: 61  acaatttttaaaaaatagtactccctagaatccacacgcgcagcagtaaatcctgccagc 120
           ||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 567 acaattttttaaaaatagtactccgtagaatccacatgcgcagcagtaaatcctgccagc 508

                                                                       
Query: 121 aaagcccgttccgcatcctctgactcacccacgatgctgatgctgactgtgctcagtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 507 aaagcccgttccgcatcctctgactcacccacgatgctgatgctgactgtgttcagtcct 448

                                                                       
Query: 181 catggggtccatgccagtgtgcagctccagtgcctgagatgcccgtggcacacaacaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catggggtccatgccagtgtgcagctccagtgcctgagatgcccgtggcacacaacaaag 388

                                                                       
Query: 241 ccagtctaaaagagacttacctgcacaaccctgaccagagtttcaggatatttctcaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 387 ccagtctaaaagagacttacctgcacaaccctgaccagagtttcagggtatttctcaaac 328

                                                                       
Query: 301 actccttgaaaagctgctgcaggaagccagagcacggtggacgagacagcggcacgggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 actccttgaaaagctgctgcaggaagccagagcacggtggacgagacagcggcacgggca 268

                                                                       
Query: 361 gaaactgttttgtatggtgcagtgtgaccctgtaacaatgactctgttagtccttcatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gaaactgttttgtatggtgcagtgtgaccctgtaacaatgactctgttagtccttcatga 208

                  
Query: 421 aggaccc 427
           |||||||
Sbjct: 207 aggaccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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