BAC Information

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BAC

Clone NameMSMg01-378D09
Chromosome2 (Build37)
Map Location 42,527,799 - 42,528,335
singlet/doubletsinglet
Overlap genenone
Upstream geneLrp1b, LOC625094
Downstream geneLOC100041228, LOC100041245, Kynu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378D09.T7 (MSMg01no378_d09.b1)MSMg01-378D09.TJ (MSMg01no378_d09.g1)
ACCAG483112AG483113
length764765
length of high quality
(start - end)
529 (49 - 577)537 (77 - 613)
definitionCHROMAT_FILE: MSMg01no378_d09.b1 PHD_FILE: MSMg01no378_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:39 2005CHROMAT_FILE: MSMg01no378_d09.g1 PHD_FILE: MSMg01no378_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACTGATCAATCTTGAATGGCGAGAAGCACCTAAAGAAAC
ATTCAACATCCTTAATCATCAGGGAAATGCAATCAGAATGACATTGCTAT
TCCACCTCACAGTAGTAAGAATGGCTAAGATCAAAAACTCAGATGACAGC
AGATGTGGAGAAAGAGGAACACTCCTCCACTGCTGGTGGGATTACAAGCT
GGTACAATCACTCTGAAAATCAGCCTGCCTATTCCTCAGAAAACTGAAAA
TAGTTTTCTTGAGGACCAAGCCATACCACTCCTCGACATATACCCAAAGA
TTCTCCAACATATAATAAGAACACATGATCTACGATGTTTATAGCAACCT
TATTTATAATAGCCAGAAGCTGTAAAGAACCCAGATGTCCTTCAACAGAG
GAACAGATCAAGAAAATGTGGTACATTTACACACTGGACTACTATTCAGA
TATTAAAAACAATGACATCAAAAAATTCTCAGGAAGATGATGGAACTTGA
AAATATCATCCTGAGTGTCATAACCTGTTGTGTCCGGCCAGCAGCTCACA
TGTCTGGGTTCTAGTCTGGAAAGGCATCTTGGAAACCTGGAAGAGAAGAG
GGAGCTAGGTGGATGAGAGAAGATGTAGCTTAGACAANTTCTGATCAAAG
CTCAATTTACTAATTCCGACACTCCCTTTTGAAGGAGGGAAGGGGCCCGA
ATTCCACCAACCAT
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCTAAACTTCACAAAAAGCA
CCCAGTATTTTCCTAGATTTGAGATTCAAAAAGAATTTTCCATTCTATTT
CTGAGTAACATTCTGACTTCATCCTTGAAATTCTTTCCCACCCAGACTTT
CCCTGGTTTTCTCATGATCTTCTTACTTCATTAACAGTCTTTTCCTACAA
AGTGTGTTTTTCACTGCTCACTCTTTCTTCGCCGGGGTTCACTAACATCA
TAGTAATGTTCTATGACTCCCTATAACTTTAACATTATGAACTGGGATAT
TTTTGTGGATTTTAAATGTAGTCTGAATCTTCTTCCTCCTACAACTCCTT
TTTTCTTTTTATATATTTTTGGGGCTGATATACCTAAATCTATTATTTTC
ACCCATTATCTAATAGGCATGTTCTTAATCTCCATGACGGCCACTGATAT
AGTCTCCAAGACAGAGCTATAACCATCTTATATTCATCCTAGTTCTTTAT
TTTATGTCCAGGGCTCAAATCAACATGTAATTTGCTCATTGAGCTAGTGA
ACTAATCTATGTGTTTTTTCCCCTCTGCAACATCATAATAGGTGGGAACC
TATTTTAAATATTTACCACCTAGTCCCTAAAATAACACATTACACCTTAT
TTTTAATCCTTTCCTTATTAAATGCTCTTAAAAGTTGCTGTCGGAAAAAG
AATCATTCTCTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_d09.g1 MSMg01no378_d09.g1 CHROMAT_FILE:
MSMg01no378_d09.g1 PHD_FILE: MSMg01no378_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:39 2005
         (537 letters)



>mm_chr2_42527599_42528535
          Length = 937

 Score = 1007 bits (521), Expect = 0.0
 Identities = 533/537 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcctaaacttcacaaaaagcacccagtattttcctagatttgagattcaaaaagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcctaaacttcacaaaaagcacccagtattttcctagatttgagattcaaaaagaat 260

                                                                       
Query: 61  tttccattctatttctgagtaacattctgacttcatccttgaaattctttcccacccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccattctatttctgagtaacattctgacttcatccttgaaattctttcccacccaga 320

                                                                       
Query: 121 ctttccctggttttctcatgatcttcttacttcattaacagtcttttcctacaaagtgtg 180
           |||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttccctggttgtctcacaatcttcttacttcattaacagtcttttcctacaaagtgtg 380

                                                                       
Query: 181 tttttcactgctcactctttcttcgccggggttcactaacatcatagtaatgttctatga 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tttttcactgctcactctttcttcgctggggttcactaacatcatagtaatgttctatga 440

                                                                       
Query: 241 ctccctataactttaacattatgaactgggatatttttgtggattttaaatgtagtctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccctataactttaacattatgaactgggatatttttgtggattttaaatgtagtctga 500

                                                                       
Query: 301 atcttcttcctcctacaactccttttttctttttatatatttttggggctgatataccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcttcttcctcctacaactccttttttctttttatatatttttggggctgatataccta 560

                                                                       
Query: 361 aatctattattttcacccattatctaataggcatgttcttaatctccatgacggccactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatctattattttcacccattatctaataggcatgttcttaatctccatgacggccactg 620

                                                                       
Query: 421 atatagtctccaagacagagctataaccatcttatattcatcctagttctttattttatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatagtctccaagacagagctataaccatcttatattcatcctagttctttattttatg 680

                                                                    
Query: 481 tccagggctcaaatcaacatgtaatttgctcattgagctagtgaactaatctatgtg 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccagggctcaaatcaacatgtaatttgctcattgagctagtgaactaatctatgtg 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)