Query= MSMg01no378_e01.b1 MSMg01no378_e01.b1 CHROMAT_FILE:
MSMg01no378_e01.b1 PHD_FILE: MSMg01no378_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:42 2005
(622 letters)
>mm_chr2_43707414_43708435
Length = 1022
Score = 1104 bits (571), Expect = 0.0
Identities = 611/627 (97%), Gaps = 10/627 (1%)
Strand = Plus / Minus
Query: 5 gaattcattcctcttagtagctcttcaaggtgaatgaggtgtcagtataactgaggagaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaattcattcctcttagtagctcttcaaggtgaatgaggtgtcagtataactgaggagaa 590
Query: 65 aaatgaagcttactgagactgtgtcctacctaataagggcacacagtcatgtgggagaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aaatgaagcttactgagactgtgtcctacctaataagggcacacagtcatgtgggagaga 530
Query: 125 tttaggggtttacctctgaagcccacctccggtctgaaggatcagctgttctggagcagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tttaggggtttacctctgaagcccacctccggtctgaaggatcagctgttctggagcagg 470
Query: 185 accatgcacctttctcttatgcatgctctgtgctgagcttcatggcaggagttagaagga 244
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 469 accatgcacctttctcttatgcatgctctctgctgagcttcatggcaggagttagaagga 410
Query: 245 gagaacacagtcttggaaaagcattagacctctttctcctagaagcagagctgccttttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gagaacacagtcttggaaaagcattagacctctttctcctagaagcagagctgccttttt 350
Query: 305 tggtgagtccagccttctgtaccactttctgcagtctgtgtgtgttcccacaccagtggg 364
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 349 tggtgagtccagccttctgtaccactttctgcagtctctgtgtgttcctacaccagtggg 290
Query: 365 gaacagctaaagcttccgtcttcataataacattgggcacatagaacaatgttaaccctc 424
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gaacagctaaagcttctgtcttcataataacattgggcacatagaacaatgttaaccctc 230
Query: 425 ccatgaaggagggttctttcttgaacttcctaccattcttccttccttccttcttccatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ccatgaaggagggttctttcttgaacttcctaccattcttccttccttccttcttccatt 170
Query: 485 cttcccttccttccttctt---tcctt-ccttccttccttctttccttccttccttcct- 539
||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct: 169 cttcccttccttccttcttccattcttcccttccttccttctttccttccttccttcctt 110
Query: 540 --tt-cttccttccttcccttcttccttccttccttcttcccttcttcccttcttccctt 596
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ccttccttccttccttcccttcttccttccttccttcttcccttcttcccttcttccctt 50
Query: 597 cttcccttc-ttcccttcttcccttcc 622
||||||||| |||| ||||| ||||||
Sbjct: 49 cttcccttccttcc-ttctttccttcc 24
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_e01.g1 MSMg01no378_e01.g1 CHROMAT_FILE:
MSMg01no378_e01.g1 PHD_FILE: MSMg01no378_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:42 2005
(481 letters)
>mm_chr2_43543539_43544419
Length = 881
Score = 915 bits (473), Expect = 0.0
Identities = 479/481 (99%)
Strand = Plus / Plus
Query: 1 tatttttaagaattgattaaatccttttcatataatttgcttctgccaattttccagagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttttaagaattgattaaatccttttcatataatttgcttctgccaattttccagagt 260
Query: 61 cattgacaacatgttaaagtcttacgtacaagtttactaaagtatatggctaagagaaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgacaacatgttaaagtcttacgtacaagtttactaaagtatatggctaagagaaga 320
Query: 121 ggagcctggtatagctgtctcctgagagaccttgccagagcctgacagaggctgatgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagcctggtatagctgtctcctgagagaccttgccagagcctgacagaggctgatgctc 380
Query: 181 ccagccaaccattggactgagcacaggttcccaatggaggagttagagaaaggactgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagccaaccattggactgagcacaggttcccaatggaggagttagagaaaggactgaag 440
Query: 241 gagatgaaggggtttgaaaccccataggaagaacaataatataaaccaatcagaaccccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagatgaaggggtttgaaaccccataggaagaacaataatataaaccaatcagaaccccc 500
Query: 301 agagctcccaggaaataaaccaccaaccaaagagtacagatggagggacccatagctgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagctcccaggaaataaaccaccaaccaaagagtacagatggagggacccatagctgca 560
Query: 361 gccacatatgtaacagaggatggccttgtcagccatcaatgggagaagcccttgatgctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccacatatgtaacagaggatggccttgtcagccatcaatgggagaagcccttgatgctg 620
Query: 421 tgaaagctcaatggccccatgtaagggaatgccagggtggcgaggtgggagtgggtgagt 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaagctcaatggccccgtgtaagggaatgccagggtggcgaggtgggagtgggtgagt 680
Query: 481 g 481
|
Sbjct: 681 g 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
