BAC Information

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BAC

Clone NameMSMg01-378H08
Chromosome2 (Build37)
Map Location 76,056,700 - 76,057,179
singlet/doubletsinglet
Overlap genePde11a
Upstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1
Downstream geneCyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378H08.T7 (MSMg01no378_h08.b1)MSMg01-378H08.TJ (MSMg01no378_h08.g1)
ACCAG483300AG483301
length770855
length of high quality
(start - end)		485 (49 - 533)---
definitionCHROMAT_FILE: MSMg01no378_h08.b1 PHD_FILE: MSMg01no378_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:57 2005CHROMAT_FILE: MSMg01no378_h08.g1 PHD_FILE: MSMg01no378_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATAAACATGCTAAACATGCTTGCAACTTACTGAAAAAAAAA
CATCACTTGTAGTAGGAATTGACATAGACAAAGCCCTTCTATCGATTGGG
CAGGCAGGATTCTGGGAGTCAGGCATGATGTTCAGATTTCTCTAAGAATC
ATCTCCCTCTGATCCTCACAGATATACATTCTACCAGTAGCTGCACTTTT
GTAAGATGAGGAATGAGGTTTGTAAGGGTACCAAATGCTCTTGGGAGATA
ATTCTTCATGGCTTTCCCCTCCTCCCCACACCACTCCCTCTCTCGTCAGC
ACATTTTACAGAGGCGCTGCACTGTCAAGGATGTTTGCACAATGAATGCC
CTTCGAAGGCAGACACAGCACCTCCTTGCTAGTAAAAAGCAGAATTATTT
GCTATGCAATATAATAAAGATTATTTCTCCCACTGGACAGGTAGCTTCAG
TTGCCTTGAGTTTGAGGTTGCTCCTGCTCCACGTGAAGTTATAAGTCTAA
GAGCCCAGCACAAACGCCGATGCTCTGGTTAGTTTTCTCCCTGTTAGAAA
TAACTAGTCTCTGTCACCGAACACGAAGCTTGAATCTCTTGCCGGGGTCC
CGAAAAAAGGTCTTGCAGGGGAAGAAAATATGATTTTTTTATATTCCAAG
GGCCCCTAAATGCATGTGGGGTGGGGGCTTGAATTTTTTTTTTTTATTTC
CATTGAGGCGGGATCACTGT

CCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGCTATTCGGGTACCTTGTGA
AACCCTGATCTCCTAGTTAGTTACTTGGTTAGTTTGTTACTTGGTTGGTT
GGTTGGTTGGTCGCCTGCCCCCCCCCCCCCCCTCCCTNCCCCCCCTCCCC
TCCCTTTCCTCCCCCCCCCCTCCCCCCCCCCCTCTCTTTCCCCCCCCCCC
CCCCCCCCCCCCCCCCTCCCCCTCCCCCCCCCCTCCCCCCCCTCCCCCCC
CCCCCCCCCCCCCCCCCCCCCTTTTTCCCCCCCTCTCCCTCCCCCCCTCC
CCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCC
TCCCCCCCCCTCCTCTCCCCCCCCCCCCCCCTTCCCCCTTCCCCCCCCCC
CCCCCCCCTCCCCCCCCCCTCCCCCCCCTCCCCCCCCCCCCTCCCCCCCC
CCTCCTTCCCCCCCCCTCCTTCCCTCCCCCTTCCCTCCCCCCCCCCCCCC
CTCCCCCCCCCCCCCCCCCCCCCTCCCGCTTTCCCTCCCCCTCCTCCCCC
TCCCCCCTCCTCCCCCCCCCCCCTCCTCTCCCCCCCCTCCTCCCCCCCCC
CCCTTCCTCCCCCCCCCCCCTCCCCTCCTCCCCTTCCTCTTCCTTCCCCC
CCCCCCCCTCTCTTCCTCCCCCCCCCTCCTTCCTCCCCCTTTCCCCCCCC
CCCTCTCCCCTCCTTTTCCCCTCCCCCTCCCCTCCTCCTATTTTCCCCCC
CCCCGCCCCCCCCCCCCCCCCTATCCTTTTCCCTTACCCCCCCTCCCCCC
CCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_h08.b1 MSMg01no378_h08.b1 CHROMAT_FILE:
MSMg01no378_h08.b1 PHD_FILE: MSMg01no378_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:57 2005
         (485 letters)



>mm_chr2_76056496_76057379
          Length = 884

 Score =  861 bits (445), Expect = 0.0
 Identities = 472/481 (98%), Gaps = 1/481 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaataaacatgctaaacatgcttgcaacttactgaaaaaaaaacatcacttgtag 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcaataaacatgctaaacatgcttgcaacttactgaaaaaaaaatatcacttgtag 264

                                                                       
Query: 65  taggaattgacatagacaaagcccttctatcgattgggcaggcaggattctgggagtcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taggaattgacatagacaaagcccttctatcgattgggcaggcaggattctgggagtcag 324

                                                                       
Query: 125 gcatgatgttcagatttctctaagaatcatctccctctgatcctcacagatatacattct 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 gcatgatgttcagatttctctaagaattatctccctctgatcctcacagatatacattct 384

                                                                       
Query: 185 accagtagctgcacttttgtaagatgaggaatgaggtttgtaagggtaccaaatgctctt 244
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 385 accagtagctgcacttttgtaagatgaggaatgagatttgtaagggtaccaaacgctctt 444

                                                                       
Query: 245 gggagataattcttcatggctttcccctcctccccacaccactccctctctcgtcagcac 304
           ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 445 gggagataattcttcatggcttttccctcctccccacaccactctctctctcgtcagcac 504

                                                                       
Query: 305 attttacagaggcgctgcactgtcaaggatgtttgcacaatgaatgcccttcgaaggcag 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attttacagaggcgc-gcactgtcaaggatgtttgcacaatgaatgcccttcgaaggcag 563

                                                                       
Query: 365 acacagcacctccttgctagtaaaaagcagaattatttgctatgcaatataataaagatt 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acacagcatctccttgctagtaaaaagcagaattatttgctatgcaatataataaagatt 623

                                                                       
Query: 425 atttctcccactggacaggtagcttcagttgccttgagtttgaggttgctcctgctccac 484
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atttctcccactggacgggtagcttcagttgccttgagtttgaggttgctcctgctccac 683

            
Query: 485 g 485
           |
Sbjct: 684 g 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space:   415150
Effective search space used:   415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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