Query= MSMg01no378_l21.b1 MSMg01no378_l21.b1 CHROMAT_FILE:
MSMg01no378_l21.b1 PHD_FILE: MSMg01no378_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:18 2005
(509 letters)
>mm_chr2_34480283_34481193
Length = 911
Score = 938 bits (485), Expect = 0.0
Identities = 500/505 (99%), Gaps = 2/505 (0%)
Strand = Plus / Plus
Query: 7 gaattcctaaatccttgcac-cacggtgctgagatggtgatgtcacagcaagtccccggg 65
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcctaaatccttgcacacacggtgctgagatggtgatgtcacagcaagtccccggg 266
Query: 66 ggtgacaccctggcatttgataatgcagcacacactgctgatatggtgatgtcatagcag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggtgacaccctggcatttgataatgcagcacacactgctgatatggtgatgtcatagcag 326
Query: 126 atccctggggtgacaccctggcacttgacaatgcccagccatgctaagctgtacacaagc 185
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 327 atccctggggtgacaccctggcacttgaaaatgcccagccatgctaagctgtacacaagc 386
Query: 186 cacgtctagtcgtcctttactcccgggacgctgggatctctggctctgctctccacagtt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cacgtctagtcgtcctttactcccgggacgctgggatctctggctctgctctccacagtt 446
Query: 246 gctggcacatggctctcagctggttaggttctcaggggtttgagttgcctggtgtcacag 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gctggcacatggctctcagctggttaggttctcaggggtttgagttgcctggtgtcacag 506
Query: 306 tccacggctgtgataggtgggcggcggcggccctcactccttgggcagtg-tgagccagc 364
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 507 tccacggctgtgataggtgggcggcggtggccctcactccttgggcagtggtgagccagc 566
Query: 365 ctgctggttggttgcatttgccatgaagacgcttccctaggacgtctgatctcaggggtg 424
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 567 ctgctggttggttgcatttgccatgaagacgcttccctaggacatctgatctcaggggtg 626
Query: 425 tcagtactgtctagcctaatctctgagcctcagccagcacctctggctacagtgctgtca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcagtactgtctagcctaatctctgagcctcagccagcacctctggctacagtgctgtca 686
Query: 485 agccccatggtgtccctattggcca 509
|||||||||||||||||||||||||
Sbjct: 687 agccccatggtgtccctattggcca 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 911
Length adjustment: 10
Effective length of query: 499
Effective length of database: 901
Effective search space: 449599
Effective search space used: 449599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_l21.g1 MSMg01no378_l21.g1 CHROMAT_FILE:
MSMg01no378_l21.g1 PHD_FILE: MSMg01no378_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:18 2005
(439 letters)
>mm_chr2_34644059_34644897
Length = 839
Score = 818 bits (423), Expect = 0.0
Identities = 435/439 (99%)
Strand = Plus / Minus
Query: 1 tttatgtagatcagtgtggcctcaaactctcagtgatcctcctgcctctgctcctgaggg 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tttatgtagatcagtgtggtctcaaactctcagtgatcctcctgcctctgctcctgaggg 468
Query: 61 ctgaaatccaaagtgaaaggcaagcatcgccactgtggtgatgtaagtgctttgaggtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctgaaatccaaagtgaaaggcaagcatcgccactgtggtgatgtaagtgctttgaggtct 408
Query: 121 tgttctttgttcatagagtccagagcacagtcaggtatgaagtagacagtgccttgacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgttctttgttcatagagtccagagcacagtcaggtatgaagtagacagtgccttgacct 348
Query: 181 cctcgcctatgctggagccatttgtctggaaccatcctagagtatgatcatcacgctggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cctcgcctatgctggagccatttgtctggaaccatcctagagtatgatcatcacgctggg 288
Query: 241 gctggtagtacaggcctgatacccctgttacttgggaggctgagggggaaggaccacaac 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 287 gctggtagtacaggcctgatacccctgttacttgggaggctgagggggagggaccacaac 228
Query: 301 ttcaaggtcattctgggctagcatgtgatgattgacagatggaatcaggccagaagagtg 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 227 ttcaaggtcattctgggctagcatgtgatgattgacagctggaatcaggccagaagagtg 168
Query: 361 cttgcctggggggcaggaatctcttagtttggttcccagaacttggggcagaaatagttc 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 cttgcctggggggcaggagtctcttagtttggttcccagaacttggggcagaaatagttc 108
Query: 421 acgagtctgtgctttgccg 439
|||||||||||||||||||
Sbjct: 107 acgagtctgtgctttgccg 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
