BAC Information

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BAC

Clone NameMSMg01-378O15
Chromosome2 (Build37)
Map Location 33,009,756 - 33,010,295
singlet/doubletsinglet
Overlap geneRalgps1
Upstream gene5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3
Downstream geneAngptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378O15.T7 (MSMg01no378_o15.b1)MSMg01-378O15.TJ (MSMg01no378_o15.g1)
ACCAG483650AG483651
length769758
length of high quality
(start - end)		117 (78 - 194)539 (79 - 617)
definitionCHROMAT_FILE: MSMg01no378_o15.b1 PHD_FILE: MSMg01no378_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:31 2005CHROMAT_FILE: MSMg01no378_o15.g1 PHD_FILE: MSMg01no378_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTCCCCTGTCACTGAGGCCGCCATTCTTATTGTAGGAACTA
TCAAGGAGATCCTGGGTACTGCACAGTCTGTGGGCTGCAATGTGGATGGC
CGCCACCCTCATGACATCATAGATGACATCAACAGTGGTGCAGTGGAGTG
CCCAGCTGTAAGTGACTGTTATATAAGGGGGAAGCAGTTAGGCTGGAGGA
AAGCTGGACTTTTGTTGCTTTACTTTTGGTGTTTTACTGGGGCATTGTTA
ACTTATATTCCCTGTTGTGATTTATAATATTTCTTCCTTTTCCCACAGAG
CTAAGAAGCAACAAGATAATATTTCACTAAAAGACTATCTGATAACCAGT
GAATGGGCTTGGCTGCTTTTTCGGTCCAGTGGAGGGTTTTGGGAGGTTCA
GTATGGCTGGGGTATCCGGATCTACAAAGTACTGAATTCAAGTCCTGGCA
TAGTGTTTCCTGAAAAGAAAGGCACTTCTGTTTTCTTGCTTGTTACGTAC
ATAGTCATGAGTTTCTCTTCATTATGGATGATACATTTAACACTCTGTTT
CTGTCATTCTTTTTATCCTGGAATCTGTTCTTCCCTCTTCTAACCCCCCT
GCCTCTTTTCCCCATACCTCTTTCCACATATTCCCCCTTTATGTCGTTTC
CCGTCATCATTCTCCGCCATCCCTTTCCTTTTCATCTTATATTATCCTGT
TTTCTTCCTCTATTCTCAN

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGCAGCATGTATTCCATGT
CCCAATACTTCTTGGGCCACCATGAGGAATCCAGGAAGACTTGGCAGTGC
AGGTGGTGAAAGGTACCTTGCTGACTAGAAGTCTGAGGACACACAGGGAA
ATATAGTGATGAAAAAGATCTCCAAGGTGCAGGCTTCCATTGGCCTTCAG
GATGGTTCCTCCACCAGTGCCTAGGGGACTGTGTGCATCTGTGTACTCTC
ACAAGTACACATGCACAAAGTTATATAGCCTTATGTGTTCATGTGCACAG
TTACAGTTTAGCTAATAGACATGGCCATGGTTACACAGTCTTACATATGC
CCAATCTCATCCATAGTCACACATTTGCATGTATATATACAATGCTTATA
CCCAGTTACATATGTACAGTTTCACTGTCACACCTGTGGGCGAATACTAA
ACACAAATCTCACACACATGCACACAGGCAGACACCTCCTTAATTCATTT
ATATACTCCTGGGTGTCTGCATTCGCCTGCATGTGGTATGCACTACACCA
CACAGAACATACACACATGCACCTGGTGTGAACGCTCCTTTTTTGAAGCT
AGGGCTTCAGTCCCTGTAATTGGAAAGTGCCCAGAAGTCATCCTATCTGT
ACACTTCCCACAGAGAAAAAAGACTCGTTGGGCCATGCTGGCCGTTCCCT
GGGGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_o15.g1 MSMg01no378_o15.g1 CHROMAT_FILE:
MSMg01no378_o15.g1 PHD_FILE: MSMg01no378_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:31 2005
         (539 letters)



>mm_chr2_33009556_33010495
          Length = 940

 Score = 1027 bits (531), Expect = 0.0
 Identities = 538/541 (99%), Gaps = 3/541 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgcagcatgtattccatgtcccaatacttcttgggccaccatgaggaatccaggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acctgcagcatgtattccatgtcccaatacttcttgggccaccatgaggaatccaggaag 681

                                                                       
Query: 61  acttggcagtgcaggtggtgaaaggtaccttgctgactagaagtctgaggacacacaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acttggcagtgcaggtggtgaaaggtaccttgctgactagaagtctgaggacacacaggg 621

                                                                       
Query: 121 aaatatagtgatgaaaaagatctccaaggtgcaggcttccattggccttcaggatggttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaatatagtgatgaaaaagatctccaaggtgcaggcttccattggccttcaggatggttc 561

                                                                       
Query: 181 ctccaccagtgcctaggggactgtgtgcatctgtgtactctcacaagtacacatgcacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctccaccagtgcctaggggactgtgtgcatctgtgtactctcacaagtacacatgcacaa 501

                                                                       
Query: 241 agttatatagccttatgtgttcatgtgcacagt--tacagtttagctaatagacatggcc 298
           |||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||
Sbjct: 500 agttatatagccttatgtgttcatgtgcacagttatacagtttagct-atagacatggcc 442

                                                                       
Query: 299 atggttacacagtcttacatatgcccaatctcatccatagtcacacatttgcatgtatat 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggttacacagtcttacatatgcccaatctcatccatagtcacacatttgcatgtatat 382

                                                                       
Query: 359 atacaatgcttatacccagttacatatgtacagtttcactgtcacacctgtgggcgaata 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacaatgcttatacccagttacatatgtacagtttcactgtcacacctgtgggcgaata 322

                                                                       
Query: 419 ctaaacacaaatctcacacacatgcacacaggcagacacctccttaattcatttatatac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaacacaaatctcacacacatgcacacaggcagacacctccttaattcatttatatac 262

                                                                       
Query: 479 tcctgggtgtctgcattcgcctgcatgtggtatgcactacaccacacagaacatacacac 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctgggtgtctgcattcgcctgcatgtggtatgcactacaccacacagaacatacacac 202

            
Query: 539 a 539
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 940
Length adjustment: 10
Effective length of query: 529
Effective length of database: 930
Effective search space:   491970
Effective search space used:   491970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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