XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CAGCATCTACAAAGGAACAATTGGGGGAAATTTTTGTTAGCATCCTTTCT
TTAAAGTTTCCATAGCAGAAGGGCATGCATCACCGTGGAGCAGATGCGCT
GAGACCAAATGCTCTCTTCCTCATGATTACAGTTGGTTCTACCTGTGGAT
AGGCAAGCTAATTCCACTGCAAATGTGCAAGAGAGGGTAGTACTAACGTA
CAATGTGTGGTCCTGGAGGCTTTGTTCCCACATAATAGGGTGCTTCATTT
CACAAGAACTGGCACATACAGAACACTGAAGCAAGCAGCCCTGTGTGTTG
GGATCAGGATCTGCCTATACTGCTTACAGAATGCCCTGGTTCACAGTGAT
GTTGACAGAAATAGTGCGGCATTTCTTATTCAGCGTTGGAAAGTAATGAT
TCTTTCTCCTCAATGTGCTCAGTGACTCTGCACCCTATTGTTTTCTGCCA
TTTGAAAACGCCCGAGGATGTCATTATAACTGCATGTATCAATATTAAAC
CTTTGCAAACAGTTGACTAAATGAGCTGTTATTATCTTTGTTTCTGAAAA
TAGTGTACCTTTTTACTTCATTTATCAGTAACTAGGTGTAGTCAATTGCA
CTCTGGTATTGATCCCAATATCTATACCAGTCCCAGACTATCTATCCTCA
AGGCATTGTGAGGTCGGGGTATGATCAAAATAAATTGACTGCTGCAAAAA
AATTT

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCAATGTGCTTTAAGATCAGGCCTGTAAGCTCG
CTTGGTTGTCTGTCTGTCTTGGTAATGGGGGACCCCAGCATGCTGGACTT
CTGCAGAATGAAACACTCTTTGAATTTACATACTCTGAGTCCAGGGTATC
ATTCTTCAGTGAATCATGGACCGTTAAAAGAGAAAGATTTATTATTCCAG
AGAGGCCATAGGGTGGAGGAAAGGTACCTCTGGATTGGGCAAAGGCAGAC
AGCGGGCAGCAGGCAGCAGGGTTTTTGTTTTGTTTTGTTTTGTTTTGTTT
TGTTTTGTTTTGTTTTCAGAAGTGGGTTTTTAATGAGAAAATGGAAAATC
TGTGCTAGGGTGAATTGGTAAGTCCTGAATGGCTAGCCTGTATGGCCAAT
AATGAATTTTGATCTCTGAACCTTGGTATTTAGTCTCAGGAATTAATCTC
CGTGGCTAAACAAGGGTGCAGAACCTTGAGTGCTAGCTTTAGAACTATAA
TCTAATGTTTAGATGTGAGAGGGAGAACAGAGGTGGAGGGCAGAGGAAGG
ATGAATGAAAATAGTTATAAATGCCCGCCCACTGTATTTTACCATTTTTT
TCATCCCATTTCCTCTCCAACTGTCATTTCCCATTTCTTTCTTTTTTTCC
CCCTCTTCCCCCCGCTTCGTCCCTTTTTTTCCCTCTTTCATTTCTCTCC

Query= MSMg01no379_i21.b1 MSMg01no379_i21.b1 CHROMAT_FILE:
MSMg01no379_i21.b1 PHD_FILE: MSMg01no379_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:21 2005
         (552 letters)



>mm_chr2_44317191_44318142
          Length = 952

 Score = 1031 bits (533), Expect = 0.0
 Identities = 545/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccagcatctacaaaggaacaattgggggaaatttttgttagcatcctttcttt 63
           ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccagcaacgagaaaggaacaattgggggaaatttttgttagcatcctttcttt 263

                                                                       
Query: 64  aaagtttccatagcagaagggcatgcatcaccgtggagcagatgcgctgagaccaaatgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaagtttccatagcagaagggcatgcatcaccgtggagcagatgcgctgagaccaaatgc 323

                                                                       
Query: 124 tctcttcctcatgattacagttggttctacctgtggataggcaagctaattccactgcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctcttcctcatgattacagttggttctacctgtggataggcaagctaattccactgcaa 383

                                                                       
Query: 184 atgtgcaagagagggtagtactaacgtacaatgtgtggtcctggaggctttgttcccaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgtgcaagagagggtagtactaacgtacaatgtgtggtcctggaggctttgttcccaca 443

                                                                       
Query: 244 taatagggtgcttcatttcacaagaactggcacatacagaacactgaagcaagcagccct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taatagggtgcttcatttcacaagaactggcacatacagaacactgaagcaagcagccct 503

                                                                       
Query: 304 gtgtgttgggatcaggatctgcctatactgcttacagaatgccctggttcacagtgatgt 363
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgtgttgggatcaggatctgcctgtactgcttacagaatgccctggttcacagtgatgt 563

                                                                       
Query: 364 tgacagaaatagtgcggcatttcttattcagcgttggaaagtaatgattctttctcctca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgacagaaatagtgcggcatttcttattcagcgttggaaagtaatgattctttctcctca 623

                                                                       
Query: 424 atgtgctcagtgactctgcaccctattgttttctgccatttgaaaacgcccgaggatgtc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atgtgctcagtgactctgcaccctattgttttctgccatttgaaaacgcccgaggatgtc 683

                                                                       
Query: 484 attataactgcatgtatcaatattaaacctttgcaaacagttgactaaatgagctgttat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attataactgcatgtatcaatattaaacctttgcaaacagttgactaaatgagctgttat 743

                    
Query: 544 tatctttgt 552
           |||||||||
Sbjct: 744 tatctttgt 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)