BAC Information

Click to search

BAC

Clone NameMSMg01-380D01
Chromosome2 (Build37)
Map Location 116,010,691 - 116,011,165
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
Downstream geneLOC433464, Tmco5, LOC100043557, LOC241621, Spred1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380D01.T7 (MSMg01no380_d01.b1)MSMg01-380D01.TJ (MSMg01no380_d01.g1)
ACCAG484625AG484626
length7611,447
length of high quality
(start - end)
481 (36 - 516)---
definitionCHROMAT_FILE: MSMg01no380_d01.b1 PHD_FILE: MSMg01no380_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:11 2005CHROMAT_FILE: MSMg01no380_d01.g1 PHD_FILE: MSMg01no380_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCAA
AAGTATTCTGCTCTCTTGCGGATCCTGTCTTTGTTCAACTTGTTCTTCCC
TCATGGAAATATCTAACCCACGTGGATCCTCCCTCACATGTCCTGGCTGA
GAATGTTTCAAGACTATGGGTAGGAATTACCTTTTTCTTTCATTCCTATC
ACAATGGCTAGAACGTTATTTGCACTCAAGAAAAATTTAAATGATACTTA
GAAAACTGGGGTTAGTGAGACGGCTAACATGAGTCACCCTTGCCTCAGGT
CTCTCCAATAAAACGGAATTTTTTTCCCAGAAAGTGAAAATATATTTCAC
TATAAAAAAGTGTTAACAATAAATATGATCTTATGTTGGAATCATAAAAT
CTAAATCTGAGCCAGACTTGGTGACCAATGCCCTTAATCCCATCACTTGG
GTGGCAGAGGCAGGTGGATCTCTGAATTTGAGGCCAGCCTGGTCTACATA
GCAAGTTCTAGAACTACAAGAACTACATAGAGAATCCCTAACTCAGAAAG
CAAAACCAACAGAAAGTTTTACATCTACACCTATGATAAAGTTATTTTTA
ATTTTTGAGAACTTATCACAGTCAAAATAACCATCCATGTCATCATGCTT
GCTGGGAAAACCCTGGAATACTAAAACCCAAAAATTGATTAACAAACTTA
TTTAATATAATTTTATTCTAAGTTCACAACGATTTTGTGGGATATAAAAT
AGAAGTACTAG
CTCCTCCCCTCTNCGCCTCCTTCTCCTCCCCTGTGTATCACCTACAAAGA
GGCGATGAGAGATAGTGGGAGATGTGAGCTTTTCTCCCCCTGTGTTNAAG
TGTAGGGCCGCTCGCGCCCGAGCTGGTGCGAATCGTCTTCCGACGGCCTC
GCCAGCCAGCATCCCGCAGCTCACCACTCCACACGCGACCCCGTTGTTAA
TTCTACTATCTCTCTCCACGACTCTTCTGCAGCCTCGCGCTCGGTTGTTC
GCGGTGATGGTTGTATGCGCGTATATGACGCGCACCGCGAGAAGCGCAAG
TCAGCGAGACTTCCATGGTCTCCGCGCCTATCCACATACACTACTCGACA
GCTTGTTATTACTATTCGTGAGTATCTTCCATATATATGCTCGATTAGCT
CTGTTTCTGTGTGATGAGAGTCACGCGAGTGAGTCGCCGCGACTATGAGG
NGGCTGAAATTGCACTCCTCTGCCGCCGAACAGGAGCNGGCGCGTAATCT
CACAGAGCCCGCCGACGCCGCTCCTTCTTCCTGTCTTCGTTATGCGCTCC
AGTCGCCGCTCTGCTCGCTTGAAGTCATGTGACTGAATGAAGAGTGTGGA
GCGTGTGAGGAGGTGATTCAGGTTACTCATCATATGTACGTCGTGACTTA
TGAGCTGTGTGTCACCACGCGCTGATGTTTGTGCGCGCAGCTCTACGTCG
TGTCATCNTCGCCGCATATACTGGTAGATGTGATGTCACATCTTANATCA
GACGCGCGTAACTACACTACTATCGCTCCGACCGCGCTGCGCTCGTGAGC
CTCCTTCTCTGTAGGATTCCTAGTTGCTGTCTGGTGGCTGCTGCGCGGAG
CCGAGCTGCTAACGATAAGTGTGAGCGACGCAGAGAAGTCGAGCGATCGT
AGAGTAGTAGTTCATGCGCAGCTCTAACGNACNCCAACGACGTGATATTT
TATCTATCTAGAAGCGCATATGACNGAATGTACACGACTCCTACGCCTCA
CGCCCGCGTCTACCAGTAAGAATCGACGTTCACGGGTCTAGAGAGCATGC
GACGGCTCGCCTGACATTCGACCACTATCCGCCGCCTGCTCGCATCATTA
TGATCTGATACATTATTCTCGCTGCTTACGATGGTATGTGCGCTACACTC
GATGGCGAGCGGAGCTGAGTCGCGACGGACGCATCGACCCAGCACTCGAT
CCGCCACTCGTGCGCGAATATACTGAGNATGGATACACGATGTCTACGCA
TCCCATCTATACTGCAGCCACGACTCGCCTACTAGTGCGCTGCGTCGACG
ACCGTCATGATACGACTAGTATACTCATAGCTTGGTGACTCTATAGCTCT
ACGAGCCTCCACNGCNGACATCAGCTGCTGCCTGCAGTATATAGTCTATC
ACGTACGTACCAGTCGACGCACACGTCTCTCACGACTGATCAGTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_d01.b1 MSMg01no380_d01.b1 CHROMAT_FILE:
MSMg01no380_d01.b1 PHD_FILE: MSMg01no380_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:11 2005
         (481 letters)



>mm_chr2_116010595_116011472
          Length = 878

 Score =  859 bits (444), Expect = 0.0
 Identities = 469/480 (97%), Gaps = 7/480 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctcaaaagtattc--tgctctcttgcggatcctgtctttgttcaacttgttct 61
           |||||||||||||||||  |  |||||||||| |||||||||||||||||||||||||||
Sbjct: 571 ggaattcctcaaaagta--ccatgctctcttgtggatcctgtctttgttcaacttgttct 514

                                                                       
Query: 62  tccctcatggaaatatctaacccacgtggatcctccctcacatgtcctggctgagaatgt 121
           ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 513 tccctcatggaaatatctagcccacgcggatcctccctcacatgtcctggctgagaatgt 454

                                                                       
Query: 122 ttcaagactatgggtaggaattacctttttctttcattcctatcacaatggctagaacgt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttcaagactatgggtaggaattacctttttctttcattcctatcacaatggctagaacgt 394

                                                                       
Query: 182 tatttgcactcaagaaaaatttaaatgatacttagaaaactggggttagtgagacggcta 241
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 393 tatttgcactcaagaaaaatttaaatgatacttagaaaactgaggttagtgagacggcta 334

                                                                       
Query: 242 acatgagtcacccttgcctcaggtctctccaataaaacggaatttttttcccagaaagtg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acatgagtcacccttgcctcaggtctctccaataaaacggaatttttttcccagaaagtg 274

                                                                       
Query: 302 aaaatatatttcactataaaaaagtgttaacaataaatatgatcttatgttggaatcata 361
           |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 273 aaaatatatttcactataaaaaagtgttaacaata---atgatcttatgttggaatcata 217

                                                                       
Query: 362 aaatctaaatctgagccagacttggtgaccaatgcccttaatcccatcacttgggtggca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 aaatctaaatctgagccagacttggtgaccaatgcccttaatcccatcacttgggtggca 157

                                                                       
Query: 422 gaggcaggtggatctctgaatttgaggccagcctggtctacatagcaagttctagaacta 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gaggcaggtggatctctgaatttgaggccagcctggtctacatagcaagttctagaacta 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 878
Length adjustment: 10
Effective length of query: 471
Effective length of database: 868
Effective search space:   408828
Effective search space used:   408828
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)