BAC Information

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BAC

Clone NameMSMg01-380E06
Chromosome2 (Build37)
Map Location 15,797,581 - 15,798,037
singlet/doubletsinglet
Overlap genenone
Upstream geneCacnb2, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
Downstream geneLOC625457, Plxdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380E06.T7 (MSMg01no380_e06.b1)MSMg01-380E06.TJ (MSMg01no380_e06.g1)
ACCAG484683AG484684
length777781
length of high quality
(start - end)
469 (23 - 491)457 (65 - 521)
definitionCHROMAT_FILE: MSMg01no380_e06.b1 PHD_FILE: MSMg01no380_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:17 2005CHROMAT_FILE: MSMg01no380_e06.g1 PHD_FILE: MSMg01no380_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCCATTTC
TTATATTAAAATGCTCTTTGGATCTCCAATTCCTTTCAACTTTGTTGACT
GCAGCACAGTTCTTTCTTTTGGATTGTTTTCACTCCTTGTTAGCAGCTTT
TGTCTGCAGGTATCCCACTGCTCTGGCATCTCTAACCTCTTGGGGGTCTT
TAAGTCAATTTAGGCTTCATCTAAATGTGCCATGCAATGGCCTCCACAAA
GGGACTCCCCTGTAAAATATTTGACCTTGGTGACTCCTTGGTTGTGGAGG
GAGATCTCATACCTCCTTATTCTATTCTAGACTCTAAAGCCAGAGCTACA
CAACTGAAGCTGTCAAGTTCTGCTGCTTTCTGGGAACCCTTGTTTTATTA
CATCAGCAACAGCATTTTAGTTTCAGTTTTTCTCTCTCTCTGCCTAAGAT
TGGCTGTTCTGAAACTTGCACAATAAACTGATCTTGAATTCAGAGATCCA
CATGCCTCTGTCTCCTGAGCGCTGGGGTTAAATGCATGTACCGCCATGCC
TGGACCTAAGCTTTTTAACAATTCTTTTCCATTAAGAACCTTTACCAGCA
TGATTACTATTTCCTCAAGATTTGGATTAAAGCTGTGGTTTGATCTGGTA
TTATGACCTTGGTGCTTTTTACCCGGAAAATGTGGTATTATAAGGATAGT
TGGTTCTCTTTCTCCCACAAATACAACACTGTTCCCCCCTCCTCTTTCTT
CTTTTTACTCCCACCCCACTAACTACA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGTGTTTTAGTGTTCACTTAGCATAAATTACTGTTT
GTCCTGGGAAATTGCTTGAGTAGCTATTTCAAGAGGACTGTAATTTTGCC
ATCTTTATTGCCTTTCTAAAGAAATCTTGTTTTAATATGTGCATGCACTA
GCTACTCTTAAATGTTTTCAATAACTTGGATTATATATATAAATGCATTA
CTGTTTTTTAAATGCCTTAGTCATTTAGACAACACACATAATCCAATAAA
CAGACCCAGAAATTTAGTTTTTTTGTAATATAGAATATATTTTAAAATCT
TAGATATAATGTTTTATAATATTTCCAGTGTATATGGTTTAAATTTCATT
TATGTTAATATTATAACTCATGTCGGATAAGTTAAAATTTGAATATAACA
GTCTACTTGATAAATGCTCACATAAAAATTTTTGGGATTGGTATAAATCT
GAGTGGTACAATTACTGCAGTAAACTGTCAGATGTTATGAGAATCTTAGG
GAATATATTGCCTGAAGTTTCATGCAGAGTTTAAGACAGTTACATTTTAA
CTTAATATTAAATAAGCAGTTTCCTGTGCTACCTAAGTAACCTATCAGTA
AAAACCGCTTATTCCTGGCCATCACAGGGAAACATTGTTTTATGCTTGTC
CAAACTGTGTAATTTGTACTTTTGGGCATTCACAACTCCTTTTTTTTCTT
TTCTCCAACACAATCTTCTTTTATGTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_e06.g1 MSMg01no380_e06.g1 CHROMAT_FILE:
MSMg01no380_e06.g1 PHD_FILE: MSMg01no380_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:17 2005
         (457 letters)



>mm_chr2_15797381_15798237
          Length = 857

 Score =  861 bits (445), Expect = 0.0
 Identities = 454/457 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgttttagtgttcacttagcataaattactgtttgtcctgggaaattgcttgagtagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgttttagtgttcacttagcataaattactgtttgtcctgggaaattgcttgagtagc 260

                                                                       
Query: 61  tatttcaagaggactgtaattttgccatctttattgcctttctaaagaaatcttgtttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttcaagaggactgtaattttgccatctttattgcctttctaaagaaatcttgtttta 320

                                                                       
Query: 121 atatgtgcatgcactagctactcttaaatgttttcaataacttggattatatatataaat 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgtgcatgcactggctactcttaaatgttttcaataacttggattatatatataaat 380

                                                                       
Query: 181 gcattactgttttttaaatgccttagtcatttagacaacacacataatccaataaacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcattactgttttttaaatgccttagtcatttagacaacacacataatccaataaacaga 440

                                                                       
Query: 241 cccagaaatttagtttttttgtaatatagaatatattttaaaatcttagatataatgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccagaaatttagtttttttgtaatatagaatatattttaaaatcttagatataatgttt 500

                                                                       
Query: 301 tataatatttccagtgtatatggtttaaatttcatttatgttaatattataactcatgtc 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataatctttccagtgtatatggtttaaatttcatttatgttaatattataactcatgtc 560

                                                                       
Query: 361 ggataagttaaaatttgaatataacagtctacttgataaatgctcacataaaaatttttg 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggataaattaaaatttgaatataacagtctacttgataaatgctcacataaaaatttttg 620

                                                
Query: 421 ggattggtataaatctgagtggtacaattactgcagt 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggattggtataaatctgagtggtacaattactgcagt 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)