Query= MSMg01no380_j03.b1 MSMg01no380_j03.b1 CHROMAT_FILE:
MSMg01no380_j03.b1 PHD_FILE: MSMg01no380_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:41 2005
(249 letters)
>mm_chr2_49889671_49890319
Length = 649
Score = 443 bits (229), Expect = e-129
Identities = 244/249 (97%)
Strand = Plus / Minus
Query: 1 tttggaaactctttctgaaaatagacttgcctattctcaaatatcacaggccattaacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttggaaactctttctgaaaatagacttgcctattctcaaatatcacaggccattaacta 390
Query: 61 aaacttaccgactattcaaagtcattcattattcaagggaagaaaccaaacctcaagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaacttaccgactattcaaagtcattcattattcaagggaagaaaccaaacctcaagcag 330
Query: 121 gacaagagataaatgatacccacacaattccttagtgaaacggatgaagcaaagtcatct 180
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 329 gacaagagataaatgacacccacacaattccttagtgaaacgggtgaagcaaagttatct 270
Query: 181 tttctctccctgtgactagtgtgcttgccaatatttcactctttttaaactactttaggt 240
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tttctctcgctgtgaccagtgtgcttgccaatatttcactctttttaaactactttaggt 210
Query: 241 ttgccaatt 249
|||||||||
Sbjct: 209 ttgccaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no380_j03.g1 MSMg01no380_j03.g1 CHROMAT_FILE:
MSMg01no380_j03.g1 PHD_FILE: MSMg01no380_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:41 2005
(417 letters)
>mm_chr2_49667599_49668415
Length = 817
Score = 723 bits (374), Expect = 0.0
Identities = 407/418 (97%), Gaps = 2/418 (0%)
Strand = Plus / Plus
Query: 1 cattgacccccttgttaggactaagtgtttaatcacccctggtggactgcacagagatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattgacccccttgttaggactaagtgtttaatcacccctggtggactgcacagagatga 260
Query: 61 cacgtgctcctgctttaggaactcgagag-aagctggtgggctcttgagtgtgttttatt 119
|||||||||||||||||||| || || || ||||||||||||||||||||||||||| ||
Sbjct: 261 cacgtgctcctgctttaggatcttga-aggaagctggtgggctcttgagtgtgttttgtt 319
Query: 120 tctatgcagaatgcttgtgtgtgctttccagaagactctacttcatgtcttactgtatca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctatgcagaatgcttgtgtgtgctttccagaagactctacttcatgtcttactgtatca 379
Query: 180 aacctgtctacaggaaatacagtctgtagcctggcagcatcgttccacctgggagcttat 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aacctgtctacaggaaatacagtctgtagcctggcagcatcgttccacctgggagcttag 439
Query: 240 aattgtatgcccacagctttctccttgatctgcatcgtctgcgtcttcatacactctcca 299
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagtgcaggcccacagctttctccttgatctgcatcgtctgcgtcttcatacactctcca 499
Query: 300 ggtggttcttaagcgtgtttaagcttgggaattactgtgctatggttgctgtatctttaa 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 ggtggttcttaagcgtgtttaagcttgggaattactgtggtatggttgctgtatctttaa 559
Query: 360 ctggtcaaaatagctgactgtcagcgaaagctttattctgatcctgacacacacacac 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 560 ctggtcaaaatagctgactgtcagcgaaagctttattctgatcctgatacacacacac 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
