BAC Information

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BAC

Clone NameMSMg01-380P23
Chromosome2 (Build37)
Map Location 145,502,972 - 145,503,451
singlet/doubletsinglet
Overlap genenone
Upstream geneDtd1, 1700010M22Rik, Slc24a3, LOC627312, OTTMUSG00000015643, LOC433482
Downstream geneLOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380P23.T7 (MSMg01no380_p23.b1)MSMg01-380P23.TJ (MSMg01no380_p23.g1)
ACCAG485242AG485243
length750756
length of high quality
(start - end)		480 (63 - 542)449 (71 - 519)
definitionCHROMAT_FILE: MSMg01no380_p23.b1 PHD_FILE: MSMg01no380_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:15 2005CHROMAT_FILE: MSMg01no380_p23.g1 PHD_FILE: MSMg01no380_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATGGATCCCCAGGCTCATGTGTTTAGATGCTTGGTCTCTAGTAGGTGG
AACTGTTTAGGAAGGATTAGGAGGAGGTGTGGCCCTGTTGGAGGAGATAT
GTCACTGGGGACTAGGAGTGGACTTTGAGGCTTCAAAATTCATGCCATTC
CCAGTGTGCTCTCTGCTTCCTGTTTGTGGATCAGGATATGAGCTCTCAGC
TGCTGTTTCCATCATATCTGCCAGCCTGTTACCATGCTCCCTGAATCATG
GCGATGGACCCCTGTCCTCTATCCCTCTGGAATTGCAGGGCCTAGATAAA
CCCTTCTCTAATTTGCCTTGGCCATAATGTTTTATCATAGCAATAGGAAA
GCAACCAAGACACCACCCCCCAGTGACTTTCATTCTCCTCCAAGGGGGCC
CTCCCCAGGGCCTCTCCAAAGTCAAGGTTTGTGCCTACTGAAAGAGTTGT
TTAGCTCCCTAGAAGCAACCTCCTTACTTAACTAAGTCCTGGTCCTCTGC
TTAGAGACAGATACATCCTATCCTTTCTCAGGGGTGAGTTGCTTTGGGAG
AACCCCGTCATTGTACCCACTCTTCGTGTGGCTCCTGTACCATAAAATGT
TGCTGGACTGTCCACCCCCATTGATTTATCCAATTTGTCATATAACCTCC
CAAAGCTCTTAAGTTTTTATAATGAAAGTTTCTTTGCTTTCCTTCTCCTT


GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTACTGGCAACTAGGTAGGAAACTTCAGA
AATACTTTGGAAAGACTGGATCCTGTTGGGCTGGAGAGATGGCTCAGCAG
TTAGGAGCACTGACTGCTCTTCTCAAGATCCTGAGTTTACATGCAACCAC
ATGGTGGCTCACAACCATCTGTAATAGGATCTGATGCCCTCTTCTGGTGT
GTCTGAAGATAGCTACAGCGTACTTAGATATAATAATAAATAAATCTTTG
GGCCGGAGCGAGCAGGGCTGGAACGAGCGGGGCCGGCCAGAGTGAGCAGA
GGTCCTGAATTCAATTTCCAGCAACCATAGGATTGCTTACAACCATCTGT
ACAGCTGCGGGTATACTCATATACATAANACAAATAAATCTTAAGAAAAT
ACTTTAAGACTGGATCCTGTCAACCACTGATGACCAAGCATGTCAGTAAG
GAACATTAGAGAAGTAATGGAAGCTAAGGAGAAATGACTCTCAGGCCCCC
TTACCTACAATTGTTGGCGCTGGATTCTTCTGTAAGCACCCAAGTGGGTA
ATGTGCTTAAAAAATTGGCCAAGGCCTTCCTTACTTTTCGAATTTTAACC
CCCCGCTGCCGGGGTAATCTAAAATAACGGGGGCCTCGCTTTTAATATTA
AAAACATAAACCGATTTCCCCCCCTGGGCGGCTTAAATTGTGCGGGCAGG
ATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_p23.b1 MSMg01no380_p23.b1 CHROMAT_FILE:
MSMg01no380_p23.b1 PHD_FILE: MSMg01no380_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:15 2005
         (480 letters)



>mm_chr2_145502772_145503651
          Length = 880

 Score =  897 bits (464), Expect = 0.0
 Identities = 476/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggctcatgtgtttagatgcttggtctctagtaggtggaactgtttaggaaggattagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggctcatgtgtttagatgcttggtctctagtaggtggaactgtttaggaaggattagga 260

                                                                       
Query: 61  ggaggtgtggccctgttggaggagatatgtcactggggactaggagtggactttgaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggtgtggccctgttggaggagatatgtcactggggactaggagtggactttgaggct 320

                                                                       
Query: 121 tcaaaattcatgccattcccagtgtgctctctgcttcctgtttgtggatcaggatatgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaaattcatgccattcccagtgtgctctctgcttcctgtttgtggatcaggatatgag 380

                                                                       
Query: 181 ctctcagctgctgtttccatcatatctgccagcctgttaccatgctccctgaatcatggc 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 381 ctctcagctgctgtttccatcatatctgccagcctattaccatgctccctgaatcatggt 440

                                                                       
Query: 241 gatggacccctgtcctctatccctctggaattgcagggcctagataaacccttctctaat 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 gatggacccctgtcctctatccctctggaattgcaggccctagataaacccttctctaat 500

                                                                       
Query: 301 ttgccttggccataatgttttatcatagcaataggaaagcaaccaagacaccacccccca 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ttgccttggccataatgttttatcatagcaataggaaagcaaccaaaacaccacccccca 560

                                                                       
Query: 361 gtgactttcattctcctccaagggggccctccccagggcctctccaaagtcaaggtttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgactttcattctcctccaagggggccctccccagggcctctccaaagtcaaggtttgt 620

                                                                       
Query: 421 gcctactgaaagagttgtttagctccctagaagcaacctccttacttaactaagtcctgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcctactgaaagagttgtttagctccctagaagcaacctccttacttaactaagtcctgg 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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