BAC Information

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BAC

Clone NameMSMg01-382B06
Chromosome2 (Build37)
Map Location 83,449,644 - 83,634,989
singlet/doubletdoublet
Overlap geneZc3h15, Itgav, Dnmt3l-ps1
Upstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077
Downstream geneD430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382B06.T7 (MSMg01no382_b06.b1)MSMg01-382B06.TJ (MSMg01no382_b06.g1)
ACCAG486067AG486068
length773760
length of high quality
(start - end)		521 (30 - 550)509 (61 - 569)
definitionCHROMAT_FILE: MSMg01no382_b06.b1 PHD_FILE: MSMg01no382_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:42 2005CHROMAT_FILE: MSMg01no382_b06.g1 PHD_FILE: MSMg01no382_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,634,579 - 83,634,989)(83,449,644 - 83,449,765)
sequence
CGCTATACGACTCACTATATTTCAGAGGATCCGCGGAATTCAGGGGAACT
ATTCCTAAACAATTCAAAGCAAAATAGAAACTGAAGCCCTACCGATCAAC
CAACTATCTTAATTACCATTAATTCAAAGATGGAGAAAAGCTGTATTTCC
TAATGTTTAGCTTTGTTTTATAATGTCAAATTGACATCAAAATCATTTGT
ATAACTAAAATATTGATTTAATAATTCTATAATGCAGGCATGGAGAGGTG
GCTCAGGAGTTAACAGCACTGGCTGGTCTTCTAGAGGAGCGGGTTCCATT
CCCAGCACCCACATGGCATTTACACGTGGTAACTCCCAACTGTCTATAGC
TCCTGTTCCAGAGGATCCGACACCTTCATGCAAATATACATGCAGGCAAA
ATACCATTGTACATTTAAAAATTAAAACAAATAAATTTGTGAAAAATCCT
ATAATGCAGTACTGAAGGCTTAATCTACATTATTCCATCTTTAAAGGGGG
TATGTAATATATTTATAAAATAAAATAGTTATTTTATCCTAATGGAGTGT
TTTCATACCTCTGGATTTTCAAGTCAAACTTCACAGAAGTATCCATCTCT
GACTGTTGGCGCACGCTGAATCGAATACTATCGAGCATCTTGATAATGGT
AACGGGTAACAATGTTTGGTCACTTATATTCCTTTAATTTATTAAACACC
CAATCTTATCCTCCCTATATTTAATTTGTTTTTTCTAAATAAACCCCTCA
TGCATATTTATTGTCTAATCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAACAGGAGGATATTGGGACAAGAGAAGGTAATGGCATGGT
AAATATGGTCAAAATACATTACAAACATATAGATTGTTAAACAATACTTT
TTAAAAACCAACTTACCAATTATGGCACCTAAAGAGACTGCCATATCCAG
GGATCCATCCCATAATCAGCTTCCAAACGCTGACACCATTGCATACACTA
GCAAGATTTTATCGAAAGGACCCAGATGTACCTGTCTCCTGTGAGACTAT
GCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGAT
GGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTA
AAGGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTAC
CCCAGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCG
GCCATCACTGAAAAGAGAGGCCCATTGGACACGCAAACTGTATATGCCCC
AGTACAGGGGAACGCCAGGGCCAAAAAAATGGGAATGGGTGGGTAGGGAA
GTGGNCGCTTTATCTACCTTTTCCCTCTTCTTTTCTCCTCCTAAATTCTT
CTTTGTATTCCCTTCTACTCCTTCCTATTTATTATAATATAACATACCTT
ATTCTCCACTCATCCTTTATCCTCAATCCAACAGCCCTATTATTCTTTAC
CCTTATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_b06.b1 MSMg01no382_b06.b1 CHROMAT_FILE:
MSMg01no382_b06.b1 PHD_FILE: MSMg01no382_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:42 2005
         (521 letters)



>mm_chr2_83634579_83635499
          Length = 921

 Score =  756 bits (391), Expect = 0.0
 Identities = 406/411 (98%)
 Strand = Plus / Minus

                                                                       
Query: 11  tcaggggaactattcctaaacaattcaaagcaaaatagaaactgaagccctaccgatcaa 70
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcaggggaactaaaactaaacaattcaaagcaaaatagaaactgaagccctaccgatcaa 352

                                                                       
Query: 71  ccaactatcttaattaccattaattcaaagatggagaaaagctgtatttcctaatgttta 130
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ccaattatcttaattaccattaattcaaagatggagaaaagctgtatttcctaatgttta 292

                                                                       
Query: 131 gctttgttttataatgtcaaattgacatcaaaatcatttgtataactaaaatattgattt 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gctttgttttataatgtcaaattgacatcaaaatcatttgtataactaaaatattgattt 232

                                                                       
Query: 191 aataattctataatgcaggcatggagaggtggctcaggagttaacagcactggctggtct 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 aataattctataatgcaggcatggagaggtggctcaggagttaacagcactggctggtct 172

                                                                       
Query: 251 tctagaggagcgggttccattcccagcacccacatggcatttacacgtggtaactcccaa 310
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tctagaggagcgggttccatttccagcacccacatggcatttacacgtggtaactcccaa 112

                                                                       
Query: 311 ctgtctatagctcctgttccagaggatccgacaccttcatgcaaatatacatgcaggcaa 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ctgtctatagctcctgttccagaggatccgacaccttcatgcaaatatacatgcaggcaa 52

                                                              
Query: 371 aataccattgtacatttaaaaattaaaacaaataaatttgtgaaaaatcct 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  aataccattgtacatttaaaaattaaaacaaataaatttgtgaaaaatcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_b06.g1 MSMg01no382_b06.g1 CHROMAT_FILE:
MSMg01no382_b06.g1 PHD_FILE: MSMg01no382_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:42 2005
         (509 letters)



>mm_chr2_83449444_83450352
          Length = 909

 Score =  236 bits (122), Expect = 3e-66
 Identities = 122/122 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaggaggatattgggacaagagaaggtaatggcatggtaaatatggtcaaaatacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaggaggatattgggacaagagaaggtaatggcatggtaaatatggtcaaaatacatt 260

                                                                       
Query: 61  acaaacatatagattgttaaacaatactttttaaaaaccaacttaccaattatggcacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaacatatagattgttaaacaatactttttaaaaaccaacttaccaattatggcacct 320

             
Query: 121 aa 122
           ||
Sbjct: 321 aa 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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