Query= MSMg01no382_d10.b1 MSMg01no382_d10.b1 CHROMAT_FILE:
MSMg01no382_d10.b1 PHD_FILE: MSMg01no382_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:53 2005
(547 letters)
>mm_chr2_117702926_117703874
Length = 949
Score = 980 bits (507), Expect = 0.0
Identities = 535/545 (98%), Gaps = 2/545 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgttgattttccaggttgtggattcagcaaacctttgccagcctttcctctgc 64
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacgttgattttccaggttgtagattcagcaaacctttgccagcctttcctctgc 264
Query: 65 cttctgtgcagggccaatgcaagcccgcctgcctttaa--gctttcagaaatgagtgagc 122
||||||||||||||||||| |||||| |||||||| || ||||||||||||||||||||
Sbjct: 265 cttctgtgcagggccaatgtaagcccacctgccttcaaaagctttcagaaatgagtgagc 324
Query: 123 caaagaagttgatataaaggcaattttgtcttgtcatcccaaagagcaggagtaggaaat 182
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaagaaattgatataaaggcaattttgtcttgtcatcccaaagagcaggagtaggaaat 384
Query: 183 ctatctcaaaaggggcaaggggggtgcatgtttaaaaccagtgaaagatttactgctttc 242
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 ctatctcaaaaggggcaaggggggtgcatatttaaaaccagtgaaagatttactgctttc 444
Query: 243 ctttttccctttcaaagaagaagtcaagggctattccttgtttgaatgagaacaaagacc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttttccctttcaaagaagaagtcaagggctattccttgtttgaatgagaacaaagacc 504
Query: 303 cttggggatcaaggtagaaagtaaatatttgaaataatgtgtcattgtattttccataat 362
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttggggatcaaggtagaaggtaaatatttgaaataatgtgtcattgtattttccataat 564
Query: 363 gacctgcagtctttgaaatctgacaactttcctatctacaggttggtttgtttttcctta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacctgcagtctttgaaatctgacaactttcctatctacaggttggtttgtttttcctta 624
Query: 423 tttgctctcttagactgtcagccaccaaagaagctcataaacacaaggactccgaaaggc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttgctctcttagactgtcagccaccaaagaagctcataaacacaaggactccgaaaggc 684
Query: 483 atccagccaacatgacctcagaagtatttacatactgtgatggagaccgtgatataattc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atccagccaacatgacctcagaagtatttacatactgtgatggagaccgtgatataattc 744
Query: 543 agttt 547
|||||
Sbjct: 745 agttt 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 949
Length adjustment: 10
Effective length of query: 537
Effective length of database: 939
Effective search space: 504243
Effective search space used: 504243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_d10.g1 MSMg01no382_d10.g1 CHROMAT_FILE:
MSMg01no382_d10.g1 PHD_FILE: MSMg01no382_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:53 2005
(497 letters)
>mm_chr2_117864883_117865779
Length = 897
Score = 893 bits (462), Expect = 0.0
Identities = 490/506 (96%), Gaps = 12/506 (2%)
Strand = Plus / Minus
Query: 2 tttgctccc-aataaatggctgtaaatggagaggaagggatatgatgtgtgactaatttc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tttgctcccaaataaatggctgtaaatggagaggaagggatatgatgtgtgactaatttc 716
Query: 61 ccaggagga-----------ccactttgaccccagtgtcttgcctcccccatgtccccac 109
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ccaggaggacctaaatatctccactttgaccccagtgtcttgcctcccccatgtccccac 656
Query: 110 tgaaaggctcatagcagctttattacaaggtaggtgtttgtgagccagctcaggatgggg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tgaaaggctcatagcagctttattacaaggtaggtgtttgtgagccagctcaggatgggg 596
Query: 170 actaagcacaccgcccagcaggggcgttctttccatgatgctcaggccgtaggatctctg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 actaagcacaccgcccagcaggggcgttctttccatgatgctcaggccgtaggatctctg 536
Query: 230 tgatctaagcgaacaggcagtatgcactgggttgattcagccaaggaagtaacttagtgt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tgatctaagcgaacaggcagtatgcactgggttgattcagccaaggaagtaacttagtgt 476
Query: 290 ggccttataaggccgtggttccggcggaagccagactgtctctcttccatctgaaggcag 349
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 475 ggccttataaggccgtggttccggcggaagcaagactgtctctcttccatctgaaggcag 416
Query: 350 gcctctgagcattcccagatgacatctgtgctttttccaccacacagttggcctccttgg 409
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 415 gcctctgagcattcccagatgacatctgtgctttttccatcacacagttggcctccttgg 356
Query: 410 ctccttgcgctgctttggttgtgcaactgggacttggcaggttctttgggctgtggaatc 469
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 355 ctccttgcgccgctttggttgtgcaattgggacttggcaggttctttgggctgtggaatc 296
Query: 470 tgtacattttcagctctgacatctca 495
||||||||||||||||||||||||||
Sbjct: 295 tgtacattttcagctctgacatctca 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
