XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTGGG
GACTCTCAGCAAGGTCAGAGACATCCTTAAACTTAAATCATTTTAAAAGC
TTGGGGAATGCTAAATGACACATAAGTCTTATTGTAAATATGATTGATTT
TTGCTACACAAAGATTTATGTAGATGAAATGTATATACCTATTTGATAAT
TTTTGTGGAAAATATATACACATTGACACAGCATTTTATTTCAAAGAATT
TCACAGGAATCAGTTTCACAGCCTGATCTCCAAAGTGAGTTCCTGGGTTG
CCAGGGCAACACAGAGAAACCCTACCTCAAAAAAAGAAACCCCCACAAAC
AAACAAACAAACAAAAAAAAAACTAATGAAAAGAATCTATTCCCATCCCT
TTAAAATCTAATTAAGCAATTATAAATGAGGAAAGTTGCCAGGATTATAA
ATCAAAACTATACAGATGATTAAATGACTTAATAGGTCACACTTGCATAA
TAATAGGTCAGAGTGAAAAAAATCCAGATTTTCCACTCTAATTTATAGCA
GTGCATATCTTAGGTGCCCTCCTCCACCTGACATCATCCTAACATGTCAA
CACTGTTCCCATTTCTCCACTAGACAAGCCCAACCCCAAATAACAGAACA
AACTACTCCTTCTCATAGACAGCCTTCATTGGTTATCCTGTTTCCAAATC
TCTAGTCCTGTGCCTTGTCTCCATCATACTTAACTTTTTAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAATGTGTGGATAGTTCATTATTCCTTAGATTAGAG
AACAAAATACCTATGAAAGGAGTTACAGAGACAAAGTTTGGAGCTAAGAT
GAAAGGTGACTATCCAGAGACTACCCCACCCAGGGATCCATCCCATAATC
AGCCACCAAACACAGACACTATATCATATGCCAGCAAGATTTTGCTGAAA
GGACCCTGATATAGCTCTCCATTCCACTATTCCAGTGTCTGGCAAATACA
GAAGTGGATGCTCACAGTCATCTATTGGATGGAACACAGGGCCCCCAATG
GAGGAGCTAAAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCTATA
GGTGGAACAGCAATACGAACTAACCAGTATCCCTAGAGCTCATGTCTCTA
GCTACATGTGTAGCAGAAGATGGCCTAACCTGCCATCATTGGGAAGAGAG
GCCCCTTGTTCTTTCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGG
GCCAAGAAGTGTGAGTGTGTGAGTAGGGGAGGAGTGTGTNNTTTTNTTNN
TTTTTTTTTTTTTTTGTTTTTGTTNTTTTGTTTTGGTTTTTTTTGTTTTT
TTGTTGTTTTTTTTTTGTTTTTTCTTTTTTGGTTGGTTCTTTTGGTGTTT
TTTTTTTTTTTTTTGTTTTTTTTTGTAT

Query= MSMg01no382_p06.b1 MSMg01no382_p06.b1 CHROMAT_FILE:
MSMg01no382_p06.b1 PHD_FILE: MSMg01no382_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:51 2005
         (570 letters)



>mm_chr2_12170620_12171590
          Length = 971

 Score =  787 bits (407), Expect = 0.0
 Identities = 441/459 (96%), Gaps = 12/459 (2%)
 Strand = Plus / Minus

                                                                       
Query: 124 gtatatacctatttgataatttttgtggaaaatatatacacattgacacagcattttatt 183
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 971 gtatatacctatttgataatttttgtggaaaatatatacacactgacacagcattttatt 912

                                                                       
Query: 184 tcaaagaatttcacaggaatcagtttcacagcctgatctccaaagtgagttcctgggttg 243
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 911 tcaaagaatttcacaggaatcaatttcacagcctgatctccaaagtgagttcctgggttg 852

                                                                       
Query: 244 ccagggcaacacagagaaaccctacctcaaaaaaagaaacccccacaaacaaacaaacaa 303
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ccagggcgacacagagaaaccctacctcaaaaaaagaaacccccacaaacaaacaaacaa 792

                                                                       
Query: 304 acaaa-----------aaaaaaactaatgaaaagaatctattcccatccctttaaaatct 352
           |||||           |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 791 acaaacaaaaaaacaaaaaaaaactaataaaaagaatctattcccatccctataaaatct 732

                                                                       
Query: 353 aattaagcaattataaatgaggaaagttgccaggattataaatcaaaactatacagatga 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aattaagcaattataaatgaggaaagttgccaggattataaatcaaaactatacagatga 672

                                                                       
Query: 413 ttaaatgacttaataggtcacacttgcataataataggtcagagtgaaaaaaa-tccaga 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 671 ttaaatgacttaataggtcacacttgcataataataggtcagagtgaaaaaaaatccaga 612

                                                                       
Query: 472 ttttccactctaatttatagcagtgcatatcttaggtgccctcctccacctgacatcatc 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttttccactctaatttatagcagtgcatatcttaggtgccctcctccacctgacatcatc 552

                                                  
Query: 532 ctaacatgtcaacactgttcccatttctccactagacaa 570
           ||||||||||||||||||||||||||||||| |||||||
Sbjct: 551 ctaacatgtcaacactgttcccatttctccattagacaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space:   538160
Effective search space used:   538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)