BAC Information

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BAC

Clone NameMSMg01-383M05
Chromosome2 (Build37)
Map Location 82,373,615 - 82,374,090
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040704, Zfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550
Downstream geneLOC269292, LOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383M05.T7 (MSMg01no383_m05.b1)MSMg01-383M05.TJ (MSMg01no383_m05.g1)
ACCAG487357AG487358
length771766
length of high quality
(start - end)		428 (30 - 457)476 (66 - 541)
definitionCHROMAT_FILE: MSMg01no383_m05.b1 PHD_FILE: MSMg01no383_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:53 2005CHROMAT_FILE: MSMg01no383_m05.g1 PHD_FILE: MSMg01no383_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTTCTTTTCTGGTC
TAGTCTATTTGGAGTTCTTTAGGCTTCTTGTATGTTCATGTGTATCTCTT
TCTTTAGGTTTTGGAAGTTTTCTTCTATAATTTTGTTGAAGATATTTGCT
GGCCCTTTAAGTTGAAAATCTTCATTTTCATCTACTCCTATTATCTATAG
GTTTGGTCTTCTCATTGTGTCCTGGATTTCCTGGATGTTTTGATTTAGGA
TCTTTTTGAATTTTGTATATTCTTTGATTGTTGTGCCGATGTTCTCTATG
GAATCTTCTGCACCTGAGCTTCTATCTTCCACCTCTTGCATTCTGTTGCT
GATGCTCGCATCTATGTTTCCAGATTTCTTTCCTAGGGTTTTTATCTCCA
GCGTTGCCTCACTTTGGGTTTTATTTATTGTGTCTACTTTTCTTTTTAGG
TCTAGTGTAGCTTTGTTCATTTCCATCACCTGCTTGCATGTGTTTTCCTG
CTTTCCTCTACGACCTGCCACTCCTTTACCTTGTTCCCCCGGATTTACCC
CCGGGAGTCACAAACGTCCTTCTTGATGGCCCTCAACACTCTCCCCAGAC
ATGCCTTTCTACCTCCATTCCAGTTCCTACACCGTTCTCTTCCCCTATTT
TACTCCTTTATTCTTTACTTCCATTTCTCCTCTCCTCTCTCCTCCCCTTG
GTCCCTAAACTGTTTTCGGTCCCTATCCATCCCCCCTTTCTTCCCCCTCT
CTACTGTTCCACCTCCCTATG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCTTCCTCTTGTAAAGTGAAAATATAAAAGTAAC
TCCTTTTCATGGTGTTTAATTCTATCCTTGGAGGGTAAATACCAATACTA
TTGCATCGCTAAACCTACACAATTATTTAACATGTTATATTACTACCTAC
TACTTCATTTCATCTATATTACTAATCTTAGTGAAGCTGTTTTAATCACG
TGGTTAAAGGATATTCTTAGAATACAAAGATTATCACTGAAAGACAAATA
GGAAGGAGCCAGATTAACAAGTTTATATGCTAAATATAGAAAAGATAAAA
CACCATCAGCCCTGGCTTTTTACTATGAAAGACTGCTACAGATCTGGTGA
AAGGAGACAAATTGGCTGGAATGGCAGTATCTGCCTCAGGAAGTGCTTTA
GTGATATACATCTCAGAAGATAGATACAGAATATGACCCTCTGCTATTTC
TTTTTGCATATGTTCTATGAATAATGCAACTTTTGGAATTGCATGCTAAA
AGATATCTTTTAACATATCTTGGATGTTAAACATATCTTGGATGATAGAA
GCCACTGTGCAATTCAATTTATCTTTAGTTACAAAACAAATAAAAGTCTT
CTGTGAGAAACATATTTTTTCNGAGAGACCTTATCTTCAATTGGGGACCC
ATTTTTAAAAGAAAATTCTTTGGGGAGAATAAAAAAGCCTTATTTCCAAA
AAGGGGTGGGTAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_m05.g1 MSMg01no383_m05.g1 CHROMAT_FILE:
MSMg01no383_m05.g1 PHD_FILE: MSMg01no383_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:53 2005
         (476 letters)



>mm_chr2_82373415_82374290
          Length = 876

 Score =  882 bits (456), Expect = 0.0
 Identities = 471/476 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttcctcttgtaaagtgaaaatataaaagtaactccttttcatggtgtttaattctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttcctcttgtaaagtgaaaatataaaagtaactccttttcatggtgtttaattctat 260

                                                                       
Query: 61  ccttggagggtaaataccaatactattgcatcgctaaacctacacaattatttaacatgt 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ccttggagggtaaataccaatactattgcatctctaaacctacacaattatttaacatgt 320

                                                                       
Query: 121 tatattactacctactacttcatttcatctatattactaatcttagtgaagctgttttaa 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatattactacatactacttcatttcatctatattactaatcttagtgaagctgttttaa 380

                                                                       
Query: 181 tcacgtggttaaaggatattcttagaatacaaagattatcactgaaagacaaataggaag 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacgtggttaaaggatattctcagaatacaaagattatcactgaaagacaaataggaag 440

                                                                       
Query: 241 gagccagattaacaagtttatatgctaaatatagaaaagataaaacaccatcagccctgg 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 gagccagattaacaagtttatatgctaaatatagaaaaaataaaacaccatcagccctgg 500

                                                                       
Query: 301 ctttttactatgaaagactgctacagatctggtgaaaggagacaaattggctggaatggc 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ctttttactatgaaagactgctacagatctggtgaaagaagacaaattggctggaatggc 560

                                                                       
Query: 361 agtatctgcctcaggaagtgctttagtgatatacatctcagaagatagatacagaatatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtatctgcctcaggaagtgctttagtgatatacatctcagaagatagatacagaatatg 620

                                                                   
Query: 421 accctctgctatttctttttgcatatgttctatgaataatgcaacttttggaattg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accctctgctatttctttttgcatatgttctatgaataatgcaacttttggaattg 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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