BAC Information

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BAC

Clone NameMSMg01-384B04
Chromosome2 (Build37)
Map Location 181,534,502 - 181,534,688
singlet/doubletsinglet
Overlap geneMyt1
Upstream geneOTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538
Downstream genePcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384B04.T7 (MSMg01no384_b04.b1)MSMg01-384B04.TJ (MSMg01no384_b04.g1)
ACCAG487595AG487596
length754748
length of high quality
(start - end)
221 (34 - 254)489 (64 - 552)
definitionCHROMAT_FILE: MSMg01no384_b04.b1 PHD_FILE: MSMg01no384_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:17 2005CHROMAT_FILE: MSMg01no384_b04.g1 PHD_FILE: MSMg01no384_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTACTCC
TATAATTTTCTTATGTCTTCCCATGACCCACATGTACCTCCCAGGACTCC
CCACATACATATTCCCTACCTTCTTAGTTCCTGACTCGTGTCCAAGCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACA
CACAAACACACACACACACACACATCTTTACTTTTTCCTCCCTAGCACCA
TCCCCATCCCTTTCTGGAAACAGGGTGAAAAAGGGCCCAGAGTTTGACCC
AGAGAAGAAAGTTTTGCCTGGGACAGGGAAAGAGAAGACTGAAGTCAGGA
CAGCTCCCTGATCTTAGAGTAGAGGTATCAGGCCTCGGGAAACCCAGGGC
TATTCAAAGGTGGGCTATCTAAGGAGTGGGCTTCTTGCATTGTGGGGATG
ACTCTCCTGGGAAGACGCTCTGTGCTCCTGCTCTGAGGAAAGGAGACACT
TGAAAAGAGCAGATTGCAAGCGTCACATGGCCAGACTGCTTTACAAATTT
GGTGTCCGTGCTATAACTATGGCCAAAAAATTTGTTCAAAGCCCATCCTT
TAAAATTGGATTTAGTAAAGAAGAGAGTGTTCCCAGTCTTTTTTGGGGTG
GAGAAAAGGGGCCCCCATGGGGGAGGTTTGAGAAAGTACCACTGGTGTAG
AGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTATATCTGGATCAGCAGGCAGCAGGAAGATAAAGTCA
CACTAGGTCTTGCTTGAGTATTTTGGACCTCAAAGCCTACGACCAGGGAC
ACACTTCCTGTAACAAGGCCACTCCTACTCCAACAAGGTCACACCTTCTA
ACAGGGCCACTCCTATGGTCTATGCGGCCATTTTCTTTCAAACCACCTCA
TCTGGGAAGAATGAACCATTGTTTGGAAGAACAGTGATTAAAGAGAAGTG
AATGAATGAAGGGCTGGAGAACTGGCTCATCAGTTAGGAGCATTTGCTGC
TTTGCAGAGGACCCAGGTTTGATTCCTAGCACCCACATGGTGGCCAATAA
CTGCCTGTAACTCTAGAGTCAGAGTATTTGATGTCCCCCAAGGGCTGCTG
CTTGCCATGGTGCATGTGAATTCACAAAAATAATTTTTAAAAACTTAAAA
ATAAATGAATGAATTGACATATGCATATATTTATGTTCATCAGGAAATCA
GAAGTGTGTGGTTTAGTCATGACATACTAGAGCTCTATTAGGCTTTTGTA
GGAGTGTGATTGTGGCTCCTGGCTCCCTGATGAAACAGAGTAATCTGACT
TGGGTCCCATTGGGTCCCGAAGAATCAAAGGTGCACCGTGAATGGCCCCC
CACCAAATAAAATGGCTCTGAGCAACATCACCCTAGTCCTTTAACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_b04.b1 MSMg01no384_b04.b1 CHROMAT_FILE:
MSMg01no384_b04.b1 PHD_FILE: MSMg01no384_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:17 2005
         (221 letters)



>mm_chr2_181534374_181534996
          Length = 623

 Score =  281 bits (145), Expect = 3e-80
 Identities = 185/219 (84%), Gaps = 34/219 (15%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttactcctataattttcttatgtcttcccatgacccacatgtacctcccaggac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaattcttactcctataattttcttatgtcttcccatgacccacatgtacctcccaggac 256

                                                                       
Query: 65  tccccacatacatattccctaccttcttagttcctgac-tc-gtgtccaagctctctctc 122
           |||||||||||||||||||||||||||||||||||||| || |||||||||         
Sbjct: 255 tccccacatacatattccctaccttcttagttcctgacttcagtgtccaag--------- 205

                                                                       
Query: 123 tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc 182
                                  |||||||||||||||||||||||||||||||||||||
Sbjct: 204 -----------------------ctctctctctctctctctctctctctctctctctctc 168

                                                  
Query: 183 tctcacacacacacacacacacacacacacacacacaca 221
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tctcacacacacacacacacacacacacacacacacaca 129


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 99
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 623
Length adjustment: 9
Effective length of query: 212
Effective length of database: 614
Effective search space:   130168
Effective search space used:   130168
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)