Query= MSMg01no384_f14.b1 MSMg01no384_f14.b1 CHROMAT_FILE:
MSMg01no384_f14.b1 PHD_FILE: MSMg01no384_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:37 2005
(484 letters)
>mm_chr2_58167850_58168734
Length = 885
Score = 907 bits (469), Expect = 0.0
Identities = 478/481 (99%), Gaps = 1/481 (0%)
Strand = Plus / Plus
Query: 5 gaattccaccagctgaaaacgagaagagctgcaaaacacacattttt-atcttaggaaac 63
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattccaccagctgaaaacgagaagagctgcaaaacacacattttttatcttaggaaac 264
Query: 64 attagacagtttgttttctgccatgctatcatcttccaaaaccaaactgaaatgtgatta 123
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 attagacagtttgttttctgccatgctatcatcttccaaagccaaactgaaatgtgatta 324
Query: 124 ggaaagagtgtggttaagcaactgtcttacctgtgggaaggtgcagtgtgatattgttgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaaagagtgtggttaagcaactgtcttacctgtgggaaggtgcagtgtgatattgttgc 384
Query: 184 agaagtctgtgaagcaacattcggttttggtcacgttgttggaactgtgacagaagacct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaagtctgtgaagcaacattcggttttggtcacgttgttggaactgtgacagaagacct 444
Query: 244 gagcatttagttccgggagggacacacacgatttgatcacctgctctttcccgttggtta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagcatttagttccgggagggacacacacgatttgatcacctgctctttcccgttggtta 504
Query: 304 gcatgacggaggcccaacatgctccttccgtttggcaggtgaagtttgaagaatcacaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcatgacggaggcccaacatgctccttccgtttggcaggtgaagtttgaagaatcacaca 564
Query: 364 aaagacacacacacttcagtcctggaaagaggacggcaagaagttttagaaggcagacat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagacacacacacttcagtcctggaaagaggacggcaagaagttttagaaggcagacat 624
Query: 424 ggcagagggagttatagtgtggtgcttgagactagaaactcagtcttaacaaaacgtgga 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 625 ggcagagggagttatagtgtggtgcttgagactagaaactcagtcttaacaaaatgtgga 684
Query: 484 g 484
|
Sbjct: 685 g 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 885
Length adjustment: 10
Effective length of query: 474
Effective length of database: 875
Effective search space: 414750
Effective search space used: 414750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_f14.g1 MSMg01no384_f14.g1 CHROMAT_FILE:
MSMg01no384_f14.g1 PHD_FILE: MSMg01no384_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:38 2005
(504 letters)
>mm_chr2_58336313_58337216
Length = 904
Score = 959 bits (496), Expect = 0.0
Identities = 502/504 (99%)
Strand = Plus / Minus
Query: 1 tccaggttgttcctagccagctccagctgtgagcattttcacacggccctggttctggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tccaggttgttcctagccagctccagctgtgagcattttcacacggccctggttctggtg 645
Query: 61 atacaaagagcagagagcaagctgagccagccataacactgagtaagtctgggaggtgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 atacaaagagcagagagcaagctgagccagccataacactgagtaagtctgggaggtgcc 585
Query: 121 tcttagaacaaacaatgtgggtgagctgtgcagagagggaatacctctggcatgacattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tcttagaacaaacaatgtgggtgagctgtgcagagagggaatacctctggcatgacattt 525
Query: 181 aaattactgaattatttaaatgaatgtcaattaggcagagtaggcttgctgccttctgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaattactgaattatttaaatgaatgtcaattaggcagagtaggcttgctgccttctgcc 465
Query: 241 agggcacttcctggttattcacacaggcaggtgtaagactttattcccttcagatatcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agggcacttcctggttattcacacaggcaggtgtaagactttattcccttcagatatcac 405
Query: 301 acttcctgttgcaccgtggagaggcagcacacaacacaattatctacttcttgacgtctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 acttcctgttgcaccgtggagaggcagcacacaacacaattatctacttcttgacgtctg 345
Query: 361 cgttatcgatatcagggtctgagaggttcagaacccacacattcttatgggtagcccttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cgttatcgatatcagggtctgagaggttcagaacccacacattcttatgggtagcccttg 285
Query: 421 aaggtatcccctagcccaactcccagcccaaataaaatattacaggtccacacacgttat 480
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 284 aaggtatcccctagcccaacacccagcccaaataaaatcttacaggtccacacacgttat 225
Query: 481 agtgaatgttaggttagaccagac 504
||||||||||||||||||||||||
Sbjct: 224 agtgaatgttaggttagaccagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
