Query= MSMg01no384_l07.b1 MSMg01no384_l07.b1 CHROMAT_FILE:
MSMg01no384_l07.b1 PHD_FILE: MSMg01no384_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:03 2005
(527 letters)
>mm_chr2_144281878_144282802
Length = 925
Score = 907 bits (469), Expect = 0.0
Identities = 509/523 (97%), Gaps = 2/523 (0%)
Strand = Plus / Plus
Query: 5 gaattctgcaacttcctagtcaaccaaaccaagtcaagtaaaagaaaatccaacagttga 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattctgcaacttcctagtcaaccaaaccaagtcatgtaaaagaaaatccaacagttga 264
Query: 65 gtttatgcttctgtgagaacctaatggcttgctcttgaactaactattcagaggcagtta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttatgcttctgtgagaacctaatggcttgctcttgaactaactattcagaggcagtta 324
Query: 125 tccaagtacaagaggaagtaacgacctacatacacagccactgctcagcctataaatgtc 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccaagtacaacaggaagtaacgacctacatacacagccactgctcagcctataaatgtc 384
Query: 185 ttaatagaatccctttgtccagcaacttggcagcctgggtctcaagagcttttctgttcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaatagaatccctttgtccagcaacttggcagcctgggtctcaagagcttttctgttcc 444
Query: 245 aattgcatgtgccgtgattgccacgtttagagacattgtttcaaatgtatcctgtggaga 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattgcatgtgccatgattgccacgtttagagacattgtttcaaatgtatcctgtggaga 504
Query: 305 ttcagggtacagctaactggctaagcatgaacttttgtggaaggagtctctgtgttcagt 364
|||||||||||||||| |||||||||||| || |||||||||||| ||||||||||||||
Sbjct: 505 ttcagggtacagctaattggctaagcatggacatttgtggaaggaatctctgtgttcagt 564
Query: 365 ctctatcacaaacaaagcaaaacctgtatcctactaaattcatgcattcaacactaagga 424
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 ct--atcacaaacaaagcaaaacctgtatcctactaaattcatgcattcaacactaagaa 622
Query: 425 agaaagaagggcatagaaccatggaaacagatacccagtccctgggaagtcttcacttcc 484
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 623 agaaagaagggcatagaaccatggaaacagatacccagcccctgggaagtctccacttcc 682
Query: 485 atgggcatcgtcaagagataattaaattatttgatatctcacc 527
|||||||||| || |||||||||||||||||||||||||||||
Sbjct: 683 atgggcatcgacaggagataattaaattatttgatatctcacc 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 925
Length adjustment: 10
Effective length of query: 517
Effective length of database: 915
Effective search space: 473055
Effective search space used: 473055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_l07.g1 MSMg01no384_l07.g1 CHROMAT_FILE:
MSMg01no384_l07.g1 PHD_FILE: MSMg01no384_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:03 2005
(453 letters)
>mm_chr2_144466621_144467473
Length = 853
Score = 876 bits (453), Expect = 0.0
Identities = 453/453 (100%)
Strand = Plus / Minus
Query: 1 cacagcactgattaaaggctgctccagtcgacagagacagaaggataagcagaaacacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cacagcactgattaaaggctgctccagtcgacagagacagaaggataagcagaaacacca 594
Query: 61 aatggacttcttttccatcccctgctgcaccctacaaattccctccagatcctccagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aatggacttcttttccatcccctgctgcaccctacaaattccctccagatcctccagata 534
Query: 121 ccacaaatgtgtctgtttccaccctcccaggtccaggcacagtgatagacactggctggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ccacaaatgtgtctgtttccaccctcccaggtccaggcacagtgatagacactggctggt 474
Query: 181 aagcacagagaggaagttatagctaaagcaacagcattactcaaagaagcataaagttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aagcacagagaggaagttatagctaaagcaacagcattactcaaagaagcataaagttaa 414
Query: 241 aagcttcatggagttagaggcaccattctgcactagtcagctcctgacagtgatctgtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aagcttcatggagttagaggcaccattctgcactagtcagctcctgacagtgatctgtca 354
Query: 301 atagacacatgagttagtgcaaagatgtgtgttagaggttcatttttctagcttcttcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atagacacatgagttagtgcaaagatgtgtgttagaggttcatttttctagcttcttcca 294
Query: 361 gtgtttctacttagtcaggctttcaaccacagtaaataaatgagcacataagtaattcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gtgtttctacttagtcaggctttcaaccacagtaaataaatgagcacataagtaattcct 234
Query: 421 agccatattcttaaataggagggctctgaaccc 453
|||||||||||||||||||||||||||||||||
Sbjct: 233 agccatattcttaaataggagggctctgaaccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
