Query= MSMg01no384_p01.b1 MSMg01no384_p01.b1 CHROMAT_FILE:
MSMg01no384_p01.b1 PHD_FILE: MSMg01no384_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:21 2005
(574 letters)
>mm_chr2_62533111_62534084
Length = 974
Score = 1079 bits (558), Expect = 0.0
Identities = 567/570 (99%)
Strand = Plus / Minus
Query: 5 gaattctagtagaccgctagcaagctccactaagcggattttttttaaaaaagcattaaa 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 774 gaattctagtagaccgctagcaagctccactaagcggatttttttttaaaaagcattaaa 715
Query: 65 cctgaatttaaagaaactaaaaaattttactcattgccccatcagaaccatggcagtaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cctgaatttaaagaaactaaaaaattttactcattgccccatcagaaccatggcagtaaa 655
Query: 125 tgacggaaatatttattgttcgctaaactttgctgaaggataaacagcctttaatgtaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tgacggaaatatttattgttcgctaaactttgctgaaggataaacagcctttaatgtaca 595
Query: 185 ttcaaaatagctcgtttgtaatgaaagcttggcccatcttttcattcaagaatgaaagtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttcaaaatagctcgtttgtaatgaaagcttggcccatcttttcattcaagaatgaaagtg 535
Query: 245 tggagctattaattcctcttgcttaagctccatacagacttaatttctaccctagttgtt 304
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tggagctattaattcttcttgcttaagctccatacagacttaatttctaccctagttgtt 475
Query: 305 tctgtgtcattaagaaaactcacgctatctttatctttcaaagaaacttttaagcaaaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tctgtgtcattaagaaaactcacgctatctttatctttcaaagaaacttttaagcaaaat 415
Query: 365 ttgttggctctggcacggcaggtctaagtgcagcattgtctgcaaagcagcgtagattct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttgttggctctggcacggcaggtctaagtgcagcattgtctgcaaagcagcgtagattct 355
Query: 425 tcatgtttcattttaaagacataagaagctctagagcatatcccatgtaacacatgtaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tcatgtttcattttaaagacataagaagctctagagcatatcccatgtaacacatgtaaa 295
Query: 485 accaaactgatacagataatagaacatattacattgccacctgtatgtgaaacagattgt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 accaaactgatacagataatagaacatattacattgccacctgtatgtgaaacagattgt 235
Query: 545 gaaatcagaacaaagtaaagaaggcaagta 574
||||||||||||||||| ||||||||||||
Sbjct: 234 gaaatcagaacaaagtagagaaggcaagta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_p01.g1 MSMg01no384_p01.g1 CHROMAT_FILE:
MSMg01no384_p01.g1 PHD_FILE: MSMg01no384_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:22 2005
(630 letters)
>mm_chr2_62378304_62379334
Length = 1031
Score = 1187 bits (614), Expect = 0.0
Identities = 627/632 (99%), Gaps = 3/632 (0%)
Strand = Plus / Plus
Query: 1 actctgtagatcagctgacctcaaactcacagacatctgccttcctctaccttctaagtg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctctagatcagctgacctcaaactcacagacatctgccttcctctaccttctaagtg 260
Query: 61 tagggattaaaggtgtacaccaccactacacaacaagctataaatttcttaataaagctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagggattaaaggtgtacaccaccactacacaacaagctataaatttcttaataaagctt 320
Query: 121 gccaatttttttttatagaataactgcaagctctttacctctttcatgtctggcaacatg 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaatttttttt-atagaataactgcaagctctttacctctttcatgtctggcaacatg 379
Query: 181 agtgaaacattgattacctcaaacattactggttttcaaaacacaagcacattatcctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agtgaaacattgattacctcaaacattactggttttcaaaacacaagcacattatcctga 439
Query: 241 gtatggtagttggaaaattctgagttagttcagtcaaaatgcaattataattattataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtatggtagttggaaaattctgagttagttcagtcaaaatgcaattataattattataaa 499
Query: 301 tgcaatgacttttctagccataaaggttattttccaggagcttcgatttccctttgtgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgcaatgacttttctagccataaaggttattttccaggagcttcgatttccctttgtgag 559
Query: 361 gacattttatattttctgtccatttaggttatgttgtctcagattttgataaactagaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gacattttatattttctgtccatttaggttatgttgtctcagattttgataaactagaat 619
Query: 421 ttcagattgcaaatgaatcattttttttatttgtctgttca--gtttccaagttagtcat 478
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 620 ttcagattgcaaatgaatcattttttttatttgtctgttcatagtttccaagttagtcat 679
Query: 479 gttaaagctgagttaataatgcttagattccaggatgtttcagatatatccaaccagggc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 680 gttaaagctgagttaataatgcttagattccaggatgtttcagatatatccaaccggggc 739
Query: 539 cagtcaatcagatcggatcagtgagttctaactagctagtttaattgagatcaagttttt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cagtcaatcagatcggatcagtgagttctaactagctagtttaattgagatcaagttttt 799
Query: 599 ccaatggcactattttaaaatgcatccttttc 630
||||||||||||||||||||||||||||||||
Sbjct: 800 ccaatggcactattttaaaatgcatccttttc 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space: 633020
Effective search space used: 633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
