Query= MSMg01no385_b03.b1 MSMg01no385_b03.b1 CHROMAT_FILE:
MSMg01no385_b03.b1 PHD_FILE: MSMg01no385_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:32 2005
(529 letters)
>mm_chr2_40830492_40831420
Length = 929
Score = 934 bits (483), Expect = 0.0
Identities = 512/525 (97%), Gaps = 7/525 (1%)
Strand = Plus / Minus
Query: 5 gaattccaccactgcttcttttgcttattattccacaagatgagaaatcttccttcagac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gaattccaccactgcttcttttgcttattattccacaagatgagaaatcttccttcagac 546
Query: 65 tcgatttagctgacattaaggtcacatctcctactacagtcacagtagagtcagcttcta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tcgatttagctgacattaaggtcacatctcctactacagtcacagtagagtcagcttcta 486
Query: 125 tgttattaggttcacagttgtttgctatttgcaattggaaatctcatgccatgtctattg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgttattaggttcacagttgtttgctatttgcaattggaaatctcatgccatgtctattg 426
Query: 185 agtttctattattttgcatgagaaatttactgtcaatcacattgtttcatgctctagtca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agtttctattattttgcatgagaaatttactgtcaatcacattgtttcatgctctagtca 366
Query: 245 aaatgttagtggatttctttagttcctactaagcattgattctctttggagtttattgac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaatgttagtggatttctttagttcctactaagcattgattctctttggagtttattgac 306
Query: 305 tttttttaaaataataactgtctaaactcagagttaaaatgataatttgatgtgtctaca 364
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttttttaaaaataataactgtctaaactcagagttaaaatgataatttgatgtgtctaca 246
Query: 365 ttgtacatttagtaaaataaactgatgtatcctgcccccccccccccgcacacacacaca 424
|||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct: 245 ttgtacatttagtaaaataaactgatgtatcctgtcccccc------g-acacacacaca 193
Query: 425 gttaacattactgtacaatacatgtccgaatcttgttccttccacttaaaattctatatc 484
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 192 gttaacattactgtacaatacatgtctgaatcttgttccttccatttaaaattctatatc 133
Query: 485 tttgggcaacatggccgcatttactaccattatacccactcccag 529
|||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 132 tttgggcaacatggccacatttactaccactatacccactcccag 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_b03.g1 MSMg01no385_b03.g1 CHROMAT_FILE:
MSMg01no385_b03.g1 PHD_FILE: MSMg01no385_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:32 2005
(540 letters)
>mm_chr2_40675825_40676763
Length = 939
Score = 988 bits (511), Expect = 0.0
Identities = 532/539 (98%), Gaps = 1/539 (0%)
Strand = Plus / Plus
Query: 2 gttacatatcttaaggaaatggattaagttaattatccaaattaaaagatgagaaaagac 61
|||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 202 gttacatagcataaggaaatgggttaagttaattatccaaattaaaagatgagaaaagac 261
Query: 62 accagaaaacttaagaaacaaacccagatgaccccatgaggatgaagcagaaccagggga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 accagaaaacttaagaaacaaacccagatgaccccatgaggatgaagcagaaccagggga 321
Query: 122 gtagccagattgtgttccattcatcagatgcacttaatatctaccaatactggcttcatg 181
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct: 322 gtagccagattgtgttccattcaccagattcccttaatatctaccaatactggcttcatg 381
Query: 182 tgtgtaagttcagttctgtattcagaggtgagctgagctggtactggcttctcggtttca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtgtaagttcagttctgtattcagaggtgagctgagctggtactggcttctcggtttca 441
Query: 242 gagaggctcagttgaaaagaaagtctttggcaagcatgttccccttggctgccaaaaatg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gagaggctcagttgaaaagaaagtctttggcaagcatgttccccttggctgccaaaaatg 501
Query: 302 agccaagtctgagcatagaatttaaagaataatttactctttaaataaatacccttgcct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agccaagtctgagcatagaatttaaagaataatttactctttaaataaatacccttgcct 561
Query: 362 tatttatcaacttgatctcaaaccaaaaaagatattgactctagtgtaacaatgtgtagg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tatttatcaacttgatctcaaaccaaaaaagatattgactctagtgtaacaatgtgtagg 621
Query: 422 tctagtgtcatatgcctactgtataaaaatataataaacttaatacaattaactgcatac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tctagtgtcatatgcctactgtataaaaatataataaacttaatacaattaactgcatac 681
Query: 482 tattaattcccattaagtaggattttttttctggaatatcttcattgagaataaacaaa 540
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 682 tattaattcccattaagtaggattttttt-ctggaatatcttcattgagaataaacaaa 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 939
Length adjustment: 10
Effective length of query: 530
Effective length of database: 929
Effective search space: 492370
Effective search space used: 492370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
