BAC Information

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BAC

Clone NameMSMg01-385F08
Chromosome2 (Build37)
Map Location 104,010,860 - 104,173,057
singlet/doubletdoublet
Overlap geneD430041D05Rik, LOC100043349
Upstream geneEhf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik
Downstream geneHipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385F08.T7 (MSMg01no385_f08.b1)MSMg01-385F08.TJ (MSMg01no385_f08.g1)
ACCAG488558AG488559
length773751
length of high quality
(start - end)		513 (26 - 538)427 (57 - 483)
definitionCHROMAT_FILE: MSMg01no385_f08.b1 PHD_FILE: MSMg01no385_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:53 2005CHROMAT_FILE: MSMg01no385_f08.g1 PHD_FILE: MSMg01no385_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,172,549 - 104,173,057)(104,010,860 - 104,011,284)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCTTGTCTAGGGTC
ACCCAGCTAGAGAGTCTTCCAGCTGGCTATAAGCCTTAGGCTGAGCTGTC
TGTCTCGTCAGTCTAAAACACTGAAGAAAATCAGATTCCGCCTTACTGGT
TCATGATGGCTGAGCCTCTCCCAAGCTAGGGCCAAAACCATGGAGACTTT
TCTGAAGACAGGATGGTGTATGTTTAATTCCACAGAATGTCTGGATCATT
TAGCCTGCTACCAATTCCTACTTAAAAATCAGAAGACTGTGCAGGCAGCT
TACCAATCAGCAGGGTATTATGTACAATCTAATAGCTCTGTTTCCAGTAA
AAAACTGGATGGCTATCAGTAATATTTAGGAAAGGTGATTACAGTAACAT
TATCGACTTCTTTGAACGTTTGGTTTCTGCCATGGAATGGACTTGTAAGG
TGGCTTTCTTGACGATAGGATCTTTGTCATGGAAAGTGGTCTTCACTACT
GTATATTTATACATTAGCCTCCTAATTGCTCCTTGGGCGTCTCAGTATAA
GCGCCTGTATATATCCCTATACGACATCAGTTTTGTACTAGGGTGAGCTT
TCCATTTCCTGAAAAATAGTTGTTGTTTTTTTTTCCATCTTTGAGAATTT
TTTGATCCACCTATGGTTGCTTCTTTCTCCCCCCCCGGGAAATTTTTTCT
TTTTTCTCCCCGAACTCCCTGATGGTAATAAAACCGGCCTCCCATGCCCC
AAGGCCCAATTCCTTCCACATAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAAAGCCTAAGGGTCTTTAATTCACGCTCCATTGTAAAGGAGAGG
AATCTGAGGCCAGAGCAATTAAATGATTTGCTCAAAGTTGCCCGGCGGTG
GGCATGTTGACCTGGGCATATCCCACTGTCCTCTGGGCTCATCAATGCTG
GTTCCTACCCCCACATGGCCTTCCTCCCCACATTTTCAATTCTTCCTAGT
ACAGAATGGATATTTGGTGCCAGATTACCCCCAGGAAGGAGATTAATGTC
ACCGAGGTGAGCTGAGCTAACTTTTTGCCACTTTTCAGTACTGTTACACA
TCTGTAGTCAGAAAAGTAAATATATTGTGTGAATGTAGAGTTGTGTGTTA
GGCAGGGCAAGGGTCTTAGTAATGCTCCTTACCCTTCATCTCCTCCTTAA
GATCCTTGGGGTGGGGCTGTGCAATGTGTGGCGTGCGTTGTTTTCTTTTT
TTCTTCCTCTCTCTTTTCCTCCTCTTTTTCTTTCTCATTTCTTTTTTTTT
CCTCTTTTCTTTCCCCTTCTCTTTTTTATCTCCCTTTATCCTCTCCTTTT
TTCTTTTTTTCCCTCTCCCTTTTTTTCTCTCCTTTACCCCAACAAACTAT
TTACTTTTTACTTTTATTCCCCCCCCCTTTTTTTTTTTTACTATTTTCCT
CTCTTTTCCCATCTCTTTTCCCCATTTTTTTTTTCTTTTTTCTTTCCCTT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_f08.b1 MSMg01no385_f08.b1 CHROMAT_FILE:
MSMg01no385_f08.b1 PHD_FILE: MSMg01no385_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:53 2005
         (513 letters)



>mm_chr2_104172345_104173257
          Length = 913

 Score =  946 bits (489), Expect = 0.0
 Identities = 504/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcttgtctagggtcacccagctagagagtcttccagctggctataagccttag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gaattcagcttgtctagggtcacccagctagagagtcttccagctggctataagccttag 654

                                                                       
Query: 65  gctgagctgtctgtctcgtcagtctaaaacactgaagaaaatcagattccgccttactgg 124
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 653 gctgagctgtctgtctcgtcagtctaaaacgctgaagaaaatcagattctgccttactgg 594

                                                                       
Query: 125 ttcatgatggctgagcctctcccaagctagggccaaaaccatggagacttttctgaagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ttcatgatggctgagcctctcccaagctagggccaaaaccatggagacttttctgaagac 534

                                                                       
Query: 185 aggatggtgtatgtttaattccacagaatgtctggatcatttagcctgctaccaattcct 244
           ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 533 aggatggtgtacgtttaattccactgaatgtctggatcatttagcctgctaccaattcct 474

                                                                       
Query: 245 acttaaaaatcagaagactgtgcaggcagcttaccaatcagcagggtattatgtacaatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 acttaaaaatcagaagactgtgcaggcagcttaccaatcagcagggtattatgtacaatc 414

                                                                       
Query: 305 taatagctctgtttccagtaaaaaactggatggctatcagtaatatttaggaaaggtgat 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 413 taatagctctgtttccagtaaaaaactggatagctatcagtaatatttaggaaaggtgat 354

                                                                       
Query: 365 tacagtaacattatcgacttctttgaacgtttggtttctgccatggaatggacttgtaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tacagtaacattatcgacttctttgaacgtttggtttctgccatggaatggacttgtaag 294

                                                                       
Query: 425 gtggctttcttgacgataggatctttgtcatggaaagtggtcttcactactgtatattta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gtggctttcttgacgataggatctttgtcatggaaagtggtcttcactactgtatattta 234

                                        
Query: 485 tacattagcctcctaattgctccttgggc 513
           |||||||||||||||||||||||||||||
Sbjct: 233 tacattagcctcctaattgctccttgggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no385_f08.g1 MSMg01no385_f08.g1 CHROMAT_FILE:
MSMg01no385_f08.g1 PHD_FILE: MSMg01no385_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:53 2005
         (427 letters)



>mm_chr2_104010660_104011486
          Length = 827

 Score =  822 bits (425), Expect = 0.0
 Identities = 425/425 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagcctaagggtctttaattcacgctccattgtaaaggagaggaatctgaggccagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagcctaagggtctttaattcacgctccattgtaaaggagaggaatctgaggccagagc 260

                                                                       
Query: 61  aattaaatgatttgctcaaagttgcccggcggtgggcatgttgacctgggcatatcccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattaaatgatttgctcaaagttgcccggcggtgggcatgttgacctgggcatatcccac 320

                                                                       
Query: 121 tgtcctctgggctcatcaatgctggttcctacccccacatggccttcctccccacatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcctctgggctcatcaatgctggttcctacccccacatggccttcctccccacatttt 380

                                                                       
Query: 181 caattcttcctagtacagaatggatatttggtgccagattacccccaggaaggagattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caattcttcctagtacagaatggatatttggtgccagattacccccaggaaggagattaa 440

                                                                       
Query: 241 tgtcaccgaggtgagctgagctaactttttgccacttttcagtactgttacacatctgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcaccgaggtgagctgagctaactttttgccacttttcagtactgttacacatctgta 500

                                                                       
Query: 301 gtcagaaaagtaaatatattgtgtgaatgtagagttgtgtgttaggcagggcaagggtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcagaaaagtaaatatattgtgtgaatgtagagttgtgtgttaggcagggcaagggtct 560

                                                                       
Query: 361 tagtaatgctccttacccttcatctcctccttaagatccttggggtggggctgtgcaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtaatgctccttacccttcatctcctccttaagatccttggggtggggctgtgcaatg 620

                
Query: 421 tgtgg 425
           |||||
Sbjct: 621 tgtgg 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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