Query= MSMg01no385_h10.b1 MSMg01no385_h10.b1 CHROMAT_FILE:
MSMg01no385_h10.b1 PHD_FILE: MSMg01no385_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:02 2005
(569 letters)
>mm_chr1_36979709_36980677
Length = 969
Score = 1000 bits (517), Expect = 0.0
Identities = 547/565 (96%), Gaps = 13/565 (2%)
Strand = Plus / Plus
Query: 5 gaattctccaagtctaagctgagaagaagctgagactgcagacagcaggcagtgaggact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccaagtctaagctgagaagaagctgagactgcagacagcaggcagtgaggact 264
Query: 65 cctgagaaaaaaaccagggcagggagctgtggcagggagctgtggcagggagcctcagga 124
|||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 cctgagaaaaaaaccagggcagggagctgtggcagggagc-------------ctcagga 311
Query: 125 atggggaaagaggtggttcagtggttaagagcactggctgctcttgcagaagaccacagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atggggaaagaggtggttcagtggttaagagcactggctgctcttgcagaagaccacagt 371
Query: 185 ttgatgattcctgacacccacatggtgactcataacaatctctaactccagctccaaggg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttgatgattcctgacacccacatggtgactcataacaatctctaactccagctccaaggg 431
Query: 245 aattgacacctctggcttctgagggcacccatgtgtacacacacacacacacacacacac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aattgacacctctggcttctgagggcacccatgtgtacacacacacacacacacacacac 491
Query: 305 acaccccttagaaataataaaaataaatgtgaaaaagtaacaaatgttctctaaaggggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 acaccccttagaaataataaaaataaatgtgaaaaagtaacaaatgttctctaaaggggt 551
Query: 365 agaggatggggttctccactgggctctcagcaaaatgctgatcacatatgtacctgaggt 424
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agagggtggggttctccactgggctctcagcaaaatgctgatcacatatgtacctgaggt 611
Query: 425 acctaaggctggggaagtaactgataaaaaagactcgtgccaccttgtctggcgttcatg 484
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 612 acctaaggctggggaagtaactgataaagaagactcgtgccaccttgtctggcgttcaca 671
Query: 485 tgagtcaggaagaccatctattccaacccatgaaactgaagaacaataactaagccctat 544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 672 tgagtcaggaagaccatctattccaacccatgaaactaaagaacaataactaagccctat 731
Query: 545 gactcacagaaaactggagggtaga 569
|||||||||||||||||||||||||
Sbjct: 732 gactcacagaaaactggagggtaga 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no385_h10.g1 MSMg01no385_h10.g1 CHROMAT_FILE:
MSMg01no385_h10.g1 PHD_FILE: MSMg01no385_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:02 2005
(428 letters)
>mm_chr2_36046390_36047218
Length = 829
Score = 806 bits (417), Expect = 0.0
Identities = 426/429 (99%), Gaps = 1/429 (0%)
Strand = Plus / Minus
Query: 1 tggccactcgcagaactgaaccctggcagagcctctgttgtgtggctcatgccgctctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tggccactcgcagaactgaaccctggcagagcctctgttgtgtggctcatgccgctctcc 570
Query: 61 cctggcagtctaacttcccatttgtctctggctttgagggtagggaaggtggggaggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cctggcagtctaacttcccatttgtctctggctttgagggtagggaaggtggggaggagg 510
Query: 121 gcacgtcagttcctttcatcctcagctcatcctaatcctgaattcccactggctacttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gcacgtcagttcctttcatcctcagctcatcctaatcctgaattcccactggctacttct 450
Query: 181 caccaggctccagcagtgtgggcagaggcagcagcaggcttattagccagcccaggcaca 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 caccaggttccagcagtgtgggcagaggcagcagcaggcttattagccagcccaggcaca 390
Query: 241 cacctcacacctagaacgggaacagaccttcctgcttgaggcactggcagggcaactcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cacctcacacctagaacgggaacagaccttcctgcttgaggcactggcagggcaactcag 330
Query: 301 ttcagtgtagcctttgtgttctagcacacaatagggcacccgataaacagct-gtgccca 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 329 ttcagtgtagcctttgtgttctagcacacaatagggcacccgataaacagctggtgccca 270
Query: 360 ctaggtcctgaaagacaacgggtggcagtggcttcttcagattagaggatctgtcagtgc 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctaggtcctgaaagacagcgggtggcagtggcttcttcagattagaggatctgtcagtgc 210
Query: 420 taggaacat 428
|||||||||
Sbjct: 209 taggaacat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 829
Length adjustment: 9
Effective length of query: 419
Effective length of database: 820
Effective search space: 343580
Effective search space used: 343580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
