BAC Information

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BAC

Clone NameMSMg01-385I20
Chromosome2 (Build37)
Map Location 140,261,658 - 140,261,818
singlet/doubletsinglet
Overlap genenone
Upstream geneC130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik
Downstream geneFlrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385I20.T7 (MSMg01no385_i20.b1)MSMg01-385I20.TJ (MSMg01no385_i20.g1)
ACCAG488726AG488727
length771737
length of high quality
(start - end)
161 (41 - 201)415 (65 - 479)
definitionCHROMAT_FILE: MSMg01no385_i20.b1 PHD_FILE: MSMg01no385_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:09 2005CHROMAT_FILE: MSMg01no385_i20.g1 PHD_FILE: MSMg01no385_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCGCTATACCACTCCCTATACGNAGAGGATCCGCGAAATTCTCCACA
CCATGTGTTATACAGACTATCCTTGTTTTANAAATGATTCTTAACTTATA
GAGGAGAACTTCCAGGCTAAATTCTCCATAACTCACTTCTTCCAGATACA
TAGCACAATTACTGGCACATGGTGAATATTCATTTACTGAAAGAAGCCAG
GGAAATTGGATGAAGCATGGAGGGGGGGGGGGAAATAACNNATANNCNGA
TAATTTGGGGGAAGATGATCCGGGGCGGGGGGGGGNTCTNNAACTATATT
CTCCNNNNTTNTTNNNNNNNNNNNCCNNNTCCACAGAAAAAAAGGGAAGG
AAAAAACTAAAAAAAGAGAAAGNNGNNNNNNNNNNNNNNNGNNNNNNNNN
NNNNNNNNNNNAATAGAGTAGGGGGGGANNTCTTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTNNNNNNNANNNNNNNNNNNNNNNNNNNNTNNTNNNNNNNN
NNNNNNNNNNNTNNTNNNTNNTNNNNNNTTTNTNNTNNNNTNNNNNTTTN
TNNTAANTTTTTNNATTTNTTTNTTTTNNNTNTNNNNNNTATTTAAATAT
TAATATTTCTGGTGATTGGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAATCAATCATAGTGAAAGGAAGCTAAGATTCTGGAA
AAAAAAAAAAAACAGAGAGAACTCTTCAAGGTCAATATGATGACTTAATC
TTGATTTTCAACTTGCTAGATTTAGTATCACCATGGAAACATATCTCTGG
GTGTTTCTGTTGATAGAGTGTTCAGACAGGTTTAACTAAAGGGTGAAGCC
CCATCCTGTTCCTGACTGTGGGTGGTACCATCCCACAGGCTAGGGTTCTG
GACTGACAAAAAAGAAAAGAGCAAGCTGAACATCAATGGTCATCCATCTC
TTTGCCTCCTGACTATGAACACAGTGTGGCTAGTTGTCTCATGGCCTGCT
GTCTGACTTCCCTGCCATCATGGGACCTCAAGCGGTGACACAACAGAAAA
TCCTTCTTTAAGTTGCTTTGTTAGATATTTTGCCACAGAAACAAATAAAG
TAGCTGATACAGATAACGTGTATTGATCTGTGAGGCTGTTGACATACTAA
ACCCGACTATGTCGCTTACGGTCTTTTATAATTGGTTTGTGTGAAGAACG
TTTAAAAGTCTCCCTATTTTTTTTTTCTTTTTTCTTCATTTCGTCTCTCC
CCTCTCTTTTTATTTTACGCTCCCTCTTTTTTCTTTTATTACTTTATATT
TTGTCTCTCTTATACTCTACATATATCTTTATCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_i20.b1 MSMg01no385_i20.b1 CHROMAT_FILE:
MSMg01no385_i20.b1 PHD_FILE: MSMg01no385_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:09 2005
         (161 letters)



>mm_chr2_140261458_140262018
          Length = 561

 Score =  290 bits (150), Expect = 3e-83
 Identities = 158/161 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctccacaccatgtgttatacagactatccttgttttanaaatgattcttaacttata 60
           ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 361 attctccacaccatgtgttatacagactatccttgctttagaaatgattcttaacttata 302

                                                                       
Query: 61  gaggagaacttccaggctaaattctccataactcacttcttccagatacatagcacaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaggagaacttccaggctaaattctccataactcacttcttccagatacatagcacaatt 242

                                                    
Query: 121 actggcacatggtgaatattcatttactgaaagaagccagg 161
           |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 241 actggcacatggtgaatattcatttactgaaagaagtcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)