BAC Information

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BAC

Clone NameMSMg01-385K13
Chromosome2 (Build37)
Map Location 35,738,498 - 35,971,986
singlet/doubletdoublet
Overlap geneTtll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18
Upstream geneD730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip
Downstream geneLOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385K13.T7 (MSMg01no385_k13.b1)MSMg01-385K13.TJ (MSMg01no385_k13.g1)
ACCAG488808AG488809
length742734
length of high quality
(start - end)		525 (34 - 558)452 (66 - 517)
definitionCHROMAT_FILE: MSMg01no385_k13.b1 PHD_FILE: MSMg01no385_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:17 2005CHROMAT_FILE: MSMg01no385_k13.g1 PHD_FILE: MSMg01no385_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,971,465 - 35,971,986)(35,738,498 - 35,738,949)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTACTGC
TTTTCCCAAGTCGGTTTTTTAGCTATCTTTAGATACTGAATATGTCCCAG
ATTTATCAGTTGTGTGTATCTGTGATGTGGGAAACTCTCCTTCCACTTGG
GAGCTCATTCAGGGAAGTGGGAACACCGGCTCCCATTTGTCTGGTGACTT
ATTAGAATATAGAATTCACCATTTCATCCTTAAGTTCTCAAAGGGTTGTG
GTGGAGTAGAATTTGATGCCAATAGCCTTCTATTTTTAATAGGAACCTAG
AGAATACTTATGATTATCTAGAGTTGTTTCTTTAGAATCTAGAACTATTT
ATTTGTATTTAAACAATGTCTATGATTTGTACCAATTCTTACCCCTCTAT
GTGAATAAACACAAGACGACAGTATCTATGTGGTCTTATTGTCTTTCATC
CACGTCCTGGATCACAACTTTCTGGTAGACTGGTTTCCACTCAAATCGGC
CAGGAGCTTATCCACGTGACGTGCTGCTTTCAAGTGCCTTCTTTCCAAAA
GGCTCCACCGGCCAAGTCTCTTCATCCCTTTCCCTGCCTAGCCTTGCCCT
TAGAGGTGAGGAATGGGACTAGGTGGCCTCCTGGGACAGGTGGCTGAAAG
GAAAGTAAGAAGGTGAATTCCCTGCCTGTCTGAAAGGCCTTTTTCTCTAT
CAACAAGTTTTCCTAAATGAATGGGTTTATTGGTAATACCCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGGCATCAGCTGAACTTCAGGATTTCAACCAAA
GTTCAGCTGTGTATACACACAGATGGACCAGTCTGTTGGAGAGGGAGATG
GTTCCTCTGGAAGAGTCTGTTCCCAGAAGCATGATCACCAGCAGGAGGAT
GCTGCCCCTTTTGTTAGGATGGCACGCTTAGTGCACATAGTTCTGGAAAG
GTGGCTCAAGAGTTAAGAGTGCTGGCTACTTTTTCAAACAACTGGGGTTC
AATTCCTAGCACTCACATGTAGCTAGCAACCATTTCTAACTCCAGTTTCA
GGGGAATCTGACACCCTCTCCTGGCCTCCGTGGGCACTGACTGCATCATA
GACATGCAGGGCAAAGCGTCCATATACATAAAATAAAAATAGTAAGCCTT
TTAATAAATGAATTCATCATTCCTATTATTACTCAGTACTGCCAATGCAA
GCGGGAGGAGTCTGAGCTTATGAGCGTTCTGATTCATGTGCTTCCTCTTC
TCGAGGACAGGACAAAGCCACACTCCTTGTTCACACTCAGAATCCCAGCT
ATTGCCACTGTGTGCCTGGGTAGTTCCTTTTCTCAGTTCTTCTCAAATGG
CTTCCCTTTGTTCCGGGTTTTATTATAAAACTTTTTGTTTTTTTCGCTCC
CCCTTCTTTTTCTTCCCGTTACATTTTCCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_k13.b1 MSMg01no385_k13.b1 CHROMAT_FILE:
MSMg01no385_k13.b1 PHD_FILE: MSMg01no385_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:17 2005
         (525 letters)



>mm_chr2_35971262_35972186
          Length = 925

 Score =  994 bits (514), Expect = 0.0
 Identities = 520/522 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttactgcttttcccaagtcggttttttagctatctttagatactgaatatgtc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ggaattcttactgcttttcccaagtcggttttttagctatctttagatactgaatatgtc 666

                                                                       
Query: 64  ccagatttatcagttgtgtgtatctgtgatgtgggaaactctccttccacttgggagctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ccagatttatcagttgtgtgtatctgtgatgtgggaaactctccttccacttgggagctc 606

                                                                       
Query: 124 attcagggaagtgggaacaccggctcccatttgtctggtgacttattagaatatagaatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 attcagggaagtgggaacaccggctcccatttgtctggtgacttattagaatatagaatt 546

                                                                       
Query: 184 caccatttcatccttaagttctcaaagggttgtggtggagtagaatttgatgccaatagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 caccatttcatccttaagttctcaaagggttgtggtggagtagaatttgatgccaatagc 486

                                                                       
Query: 244 cttctatttttaataggaacctagagaatacttatgattatctagagttgtttctttaga 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 485 cttctatttttaataggaacctagagaatacttaggattatctagagttgtttctttaga 426

                                                                       
Query: 304 atctagaactatttatttgtatttaaacaatgtctatgatttgtaccaattcttacccct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atctagaactatttatttgtatttaaacaatgtctatgatttgtaccaattcttacccct 366

                                                                       
Query: 364 ctatgtgaataaacacaagacgacagtatctatgtggtcttattgtctttcatccacgtc 423
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctatgtgaataaacgcaagacgacagtatctatgtggtcttattgtctttcatccacgtc 306

                                                                       
Query: 424 ctggatcacaactttctggtagactggtttccactcaaatcggccaggagcttatccacg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctggatcacaactttctggtagactggtttccactcaaatcggccaggagcttatccacg 246

                                                     
Query: 484 tgacgtgctgctttcaagtgccttctttccaaaaggctccac 525
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgacgtgctgctttcaagtgccttctttccaaaaggctccac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no385_k13.g1 MSMg01no385_k13.g1 CHROMAT_FILE:
MSMg01no385_k13.g1 PHD_FILE: MSMg01no385_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:17 2005
         (452 letters)



>mm_chr2_35738298_35739149
          Length = 852

 Score =  843 bits (436), Expect = 0.0
 Identities = 448/452 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggcatcagctgaacttcaggatttcaaccaaagttcagctgtgtatacacacagatg 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tttggcatcagctgaacttcaggatttcaaccaaaggtcagctgtgtatacacacagatg 260

                                                                       
Query: 61  gaccagtctgttggagagggagatggttcctctggaagagtctgttcccagaagcatgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaccagtctgttggagagggagatggttcctctggaagagtctgttcccagaagcatgat 320

                                                                       
Query: 121 caccagcaggaggatgctgccccttttgttaggatggcacgcttagtgcacatagttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccagcaggaggatgctgccccttttgttaggatggcacgcttagtgcacatagttctg 380

                                                                       
Query: 181 gaaaggtggctcaagagttaagagtgctggctactttttcaaacaactggggttcaattc 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gaaaggtggctcaagagttaagagtgctggctactttttcagacaactggggttcaattc 440

                                                                       
Query: 241 ctagcactcacatgtagctagcaaccatttctaactccagtttcaggggaatctgacacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagcactcacatgtagctagcaaccatttctaactccagtttcaggggaatctgacacc 500

                                                                       
Query: 301 ctctcctggcctccgtgggcactgactgcatcatagacatgcagggcaaagcgtccatat 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctcctggcctcagtgggcactgactgcatcatagacatgcagggcaaagcgtccatat 560

                                                                       
Query: 361 acataaaataaaaatagtaagccttttaataaatgaattcatcattcctattattactca 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 acataaaataaaaatagtaagccttttaataaatgaattcatcatttctattattactca 620

                                           
Query: 421 gtactgccaatgcaagcgggaggagtctgagc 452
           ||||||||||||||||||||||||||||||||
Sbjct: 621 gtactgccaatgcaagcgggaggagtctgagc 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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