BAC Information

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BAC

Clone NameMSMg01-385P06
Chromosome2 (Build37)
Map Location 37,513,644 - 37,514,136
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp
Downstream geneLOC639491, Dennd1a, LOC100040947, Lhx2, Nek6, Psmb7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385P06.T7 (MSMg01no385_p06.b1)MSMg01-385P06.TJ (MSMg01no385_p06.g1)
ACCAG489033AG489034
length736740
length of high quality
(start - end)
518 (31 - 548)493 (62 - 554)
definitionCHROMAT_FILE: MSMg01no385_p06.b1 PHD_FILE: MSMg01no385_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:40 2005CHROMAT_FILE: MSMg01no385_p06.g1 PHD_FILE: MSMg01no385_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCGGACAA
CCGGATCCTTCTATGGCAAAGCTTTTATTGCTTACTTCTCAAGAAGACCC
CGAACCCAGAAAATGGCGCTGCTTATATAGCCCGCATCGTGACGTTTCAG
CACCTGATGTGGCGTGACAGCTCCTGATTCGTTGCTCGCCCATCACCCCA
TTACTACGCCCCGAGATGGGCAGTGTCTAGGCATGAGTTCACTCTCGCAC
CTGCGTACAAGGCTTGTTTACTAGTTAGGCACAGTGGAGGCCAGCGCCAT
CTTATAATGGCGATTGCTCACGGCACGGCTCTCCACACTTGATCTTTGTA
CAAGCAGATAAGAATGGATTGATCTGCATTTTTCTACATGATAACCGCCT
CTTGAACCAACACCATTTGTTGAAAATGCTTTTTTCTACTGGATGGTTTT
AGCTCCTTTGTTAAAAATAAAGTGACCATAGTTGTGTGGGTTCATTTCTG
GGTCTTCAATTCTATTCCATTGATCTACCTGCCTTTCTCTGTACCAATAC
CATACAGTTTTTATTGCAATTGCTCTGTATTACATCTTGAGGTCATGGAT
GCTGATCCCGCGCAAATTTCCTTTATTGTTGAGAATGGTTTTCGCCATCC
CATGTTTTTTGTTATTCCATATGAATTTGCCAATTGTTTTTTTTACCTGG
ACAAAATAATTGAGTTGGAATTTCTTTGGGGAATAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAGAGATGAGTTCAGGTTGCCAGGCTGTCTGCAAACATC
TTTACCTGCTGAGTCATTGTACTATCTCACTCTGTAATCTTATGAATGAA
GGAATTGAGACTCAAAGAAGTTAGGTTTTGTTTAGAACTACTAGCTCATT
CCTCAGCCGTAGCTACAAATATATTGCTTTTACATTAATTATATAGCCTG
TCATATTTTTCATTTGCTTATAATGTCTGACAGTATTCAGCTTTTTTTTT
TTTCTCTGTGGCTTTTCACAGATTACTAGTAGTGCTAATCTTGTGATTTA
TGTCACAATTCGTATTAAAAGGAGCTGGGGAAAGGCTGAGTTATATACTG
ACACATGAGCTGGAGTTACCAAGTTGTCCTGAAAAGGTCTCATGTCTTTT
CTGATCCAGATTCATAGCTTTTAACCTTGTGAGCAGTGCTGGAAAGGGGA
GTGAGTACTGACAAGAGCTGGAAGTTAAGATGTATTATTGAATGGTCTAA
TGATACATACATACATACATACATACATACATATATTGTGTGTATGTGTG
TGTGCGTATATATATGCTGAGTGTCGTGCGAATCTTAATTTTTTTTTCCC
CTTTTTTCCCCCCCCCTCTTTTTTTTTTCCCCTATTTCCCTCCTTTTTCC
TCTCTTTCTTTCTTTTCCTTCTTTCTTTTTCTTCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_p06.g1 MSMg01no385_p06.g1 CHROMAT_FILE:
MSMg01no385_p06.g1 PHD_FILE: MSMg01no385_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:40 2005
         (493 letters)



>mm_chr2_37513444_37514336
          Length = 893

 Score =  953 bits (493), Expect = 0.0
 Identities = 493/493 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagatgagttcaggttgccaggctgtctgcaaacatctttacctgctgagtcattgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cagagatgagttcaggttgccaggctgtctgcaaacatctttacctgctgagtcattgta 634

                                                                       
Query: 61  ctatctcactctgtaatcttatgaatgaaggaattgagactcaaagaagttaggttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ctatctcactctgtaatcttatgaatgaaggaattgagactcaaagaagttaggttttgt 574

                                                                       
Query: 121 ttagaactactagctcattcctcagccgtagctacaaatatattgcttttacattaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttagaactactagctcattcctcagccgtagctacaaatatattgcttttacattaatta 514

                                                                       
Query: 181 tatagcctgtcatatttttcatttgcttataatgtctgacagtattcagctttttttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tatagcctgtcatatttttcatttgcttataatgtctgacagtattcagctttttttttt 454

                                                                       
Query: 241 ttctctgtggcttttcacagattactagtagtgctaatcttgtgatttatgtcacaattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ttctctgtggcttttcacagattactagtagtgctaatcttgtgatttatgtcacaattc 394

                                                                       
Query: 301 gtattaaaaggagctggggaaaggctgagttatatactgacacatgagctggagttacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtattaaaaggagctggggaaaggctgagttatatactgacacatgagctggagttacca 334

                                                                       
Query: 361 agttgtcctgaaaaggtctcatgtcttttctgatccagattcatagcttttaaccttgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agttgtcctgaaaaggtctcatgtcttttctgatccagattcatagcttttaaccttgtg 274

                                                                       
Query: 421 agcagtgctggaaaggggagtgagtactgacaagagctggaagttaagatgtattattga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agcagtgctggaaaggggagtgagtactgacaagagctggaagttaagatgtattattga 214

                        
Query: 481 atggtctaatgat 493
           |||||||||||||
Sbjct: 213 atggtctaatgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)