BAC Information

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BAC

Clone NameMSMg01-386M10
Chromosome2 (Build37)
Map Location 88,489,566 - 88,490,238
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1
Downstream geneOlfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386M10.T7 (MSMg01no386_m10.b1)MSMg01-386M10.TJ (MSMg01no386_m10.g1)
ACCAG489665AG489666
length726736
length of high quality
(start - end)		677 (46 - 722)657 (73 - 729)
definitionCHROMAT_FILE: MSMg01no386_m10.b1 PHD_FILE: MSMg01no386_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:39 2005CHROMAT_FILE: MSMg01no386_m10.g1 PHD_FILE: MSMg01no386_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:39 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTATATACCCCTGATTCTAGCTCCTTTATTTTATGAACTAAGAGC
ATAAGGACCTGAATCTTAAGAAGTGACAATATTAGAAGTCAGACTCAATT
TTCTGCCACCCCTTTATTTTTATCACATGACAAGTATCTGAAAATATAAT
ATAAACAATCATTCTTAAGTAACATCAGTCTTGAGGAGGTAGGAGATATT
GCTACCTCAAACCTTGTAAGAAATATGCATCTGTGATTTTCCAGAGCTGG
TTATAGATCTAAGAAATGATTCAGTTCATAATTCATGAACAGACTTTAAA
TTAATTTAAAATCCCATTTTAAATGAAATGGAAAATTCAATTGGAATTGA
AATTCAGAAAAATGATATTTACTTGATGCATACAAACATGTATATAAAAT
TTAAAGTTGGATAAGGCAAAATTAATGCTCAATTTATCTCTTCCTTTTTC
TTGACTTTAGACAGGACTTATAAAGAGATGATGATGAATTCAGGATCTGG
AGTCAAAAATCTATGCTTAGATGTGGTCGGCTGTGTGATTGTTGTGTTAT
CATGCATGTATATCTTCCAGATTAAGATTATAGCTATTTTATTTACCTGT
CAAATGATATATTAACACTATCACAATGCAGTTATTAAAAACATTTTAAT
AAGACTTTTTATCTATTATGATAGTT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGAAATTCTTTGGCAAATGGATGGAAC
TAGAAAAATATCATCCTGAGTGAGGTAACCCAGTCACAAAAGAACACACA
TGGTATACATTCATAACCAAGAAGCTCAGAATACCCAAGATACAATTCAC
AGACCACATGAAGCTCAAAGAGAAGACTAAAGTACAAAAAGTACTGTCCT
TCTTAGAACGGGGAACAAAATACCCATGGAAGGAGTTATAGAGACAAAGT
TTGGAGTGGAGACTGAAGGAAAGGCCATCCAGATACTATCCCACCTGGAG
ATCCATTGCATATACAGTCATCGAGCCCAGACAATATTGTAGATGACAAC
AAGTGCTTGTTGAAAGAAGTCTCATATAGCTGTCTCCTGAGAGGCTCTAC
CAATGCCTGACAAATGCAAAGGCAGATGCTCTCAGCCAACCTTTGGACTG
AGAACAGGCCAATGGAGGAACTAGAGAAAGGAACCAAGGAGATGGAGGAG
ATTGTACCTACATAGGAAGAACAATAAAATGAACTAACCAGTACCCCCAG
AGCTTCCAGGGACTAAACCACCATCCAAAGAGTACACAGAGAGTTACTCA
TGGCTCCAGCTACATATGTAGCAAAGGATGGCCTTCACAGTCATCAATGG
GAGAAAAGGCCCTTGGTCTTCTGAAGGCCCTATGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_m10.b1 MSMg01no386_m10.b1 CHROMAT_FILE:
MSMg01no386_m10.b1 PHD_FILE: MSMg01no386_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:39 2005
         (677 letters)



>mm_chr2_88489362_88490438
          Length = 1077

 Score = 1278 bits (661), Expect = 0.0
 Identities = 670/673 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatatacccctgattctagctcctttattttatgaactaagagcataaggacc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatataccactgattctagctcctttattttatgaactaagagcataaggacc 264

                                                                       
Query: 65  tgaatcttaagaagtgacaatattagaagtcagactcaattttctgccacccctttattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaatcttaagaagtgacaatattagaagtcagactcaattttctgccacccctttattt 324

                                                                       
Query: 125 ttatcacatgacaagtatctgaaaatataatataaacaatcattcttaagtaacatcagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatcacatgacaagtatctgaaaatataatataaacaatcattcttaagtaacatcagt 384

                                                                       
Query: 185 cttgaggaggtaggagatattgctacctcaaaccttgtaagaaatatgcatctgtgattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgaggaggtaggagatattgctacctcaaaccttgtaagaaatatgcatctgtgattt 444

                                                                       
Query: 245 tccagagctggttatagatctaagaaatgattcagttcataattcatgaacagactttaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccagagctggttatagatctaagaaatgattcagttcataattcatgaacagactttaa 504

                                                                       
Query: 305 attaatttaaaatcccattttaaatgaaatggaaaattcaattggaattgaaattcagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attaatttaaaatcccattttaaatgaaatggaaaattcaattggaattgaaattcagaa 564

                                                                       
Query: 365 aaatgatatttacttgatgcatacaaacatgtatataaaatttaaagttggataaggcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatgatatttacttgatgcatacaaacatgtatataaaatttaaagttggataaggcaa 624

                                                                       
Query: 425 aattaatgctcaatttatctcttcctttttcttgactttagacaggacttataaagagat 484
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 aattaatgctcaatttatctcttcctttttcttgactttggacaggacttataaagagat 684

                                                                       
Query: 485 gatgatgaattcaggatctggagtcaaaaatctatgcttagatgtggtcggctgtgtgat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatgatgaattcaggatctggagtcaaaaatctatgcttagatgtggtcggctgtgtgat 744

                                                                       
Query: 545 tgttgtgttatcatgcatgtatatcttccagattaagattatagctattttatttacctg 604
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 745 tgttgtgttatcatgcatgtatatcttccagattaagattttagctattttatttacctg 804

                                                                       
Query: 605 tcaaatgatatattaacactatcacaatgcagttattaaaaacattttaataagactttt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcaaatgatatattaacactatcacaatgcagttattaaaaacattttaataagactttt 864

                        
Query: 665 tatctattatgat 677
           |||||||||||||
Sbjct: 865 tatctattatgat 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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